https://launchpad.net/ubuntu/+source/lammps/0~20180822.gitb47e49223+dfsg1-2/+build/15524756 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-023 4.4.0-137-generic #163-Ubuntu SMP Mon Sep 24 13:14:43 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_164 python-lpbuildd_164 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Oct 20:35:42 ntpdate[1814]: adjust time server 10.211.37.1 offset 0.001517 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15524756 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-15524756 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15524756 Starting target for build PACKAGEBUILD-15524756 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15524756 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15524756 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15524756 Updating target for build PACKAGEBUILD-15524756 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1010 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8765 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5070 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-security/universe i386 Packages [7440 B] Get:10 http://ftpmaster.internal/ubuntu cosmic-security/universe Translation-en [2720 B] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [26.2 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [14.7 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [103 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [68.3 kB] Fetched 16.0 MB in 6s (2511 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential bzip2 cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libidn11 libidn2-0 libisl19 libitm1 libkmod2 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libquadmath0 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libunistring2 libusb-0.1-4 libuuid1 libzstd1 linux-libc-dev make mount multiarch-support ncurses-base ncurses-bin openssl patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux 127 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 96.5 MB of archives. After this operation, 118 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 libc6-dev i386 2.28-0ubuntu1 [2323 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libc-dev-bin i386 2.28-0ubuntu1 [71.5 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 linux-libc-dev i386 4.18.0-9.10 [1040 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 libc6 i386 2.28-0ubuntu1 [2536 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libc-bin i386 2.28-0ubuntu1 [588 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 libquadmath0 i386 8.2.0-7ubuntu1 [208 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libitm1 i386 8.2.0-7ubuntu1 [30.8 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-8-base i386 8.2.0-7ubuntu1 [18.3 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc1 i386 1:8.2.0-7ubuntu1 [48.1 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libmpx2 i386 8.2.0-7ubuntu1 [13.0 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libcc1-0 i386 8.2.0-7ubuntu1 [41.8 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libatomic1 i386 8.2.0-7ubuntu1 [9612 B] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libgomp1 i386 8.2.0-7ubuntu1 [80.7 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++6 i386 8.2.0-7ubuntu1 [430 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu6 [60.5 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-4ubuntu1 [84.6 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 debianutils i386 4.8.6 [86.1 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu3 [647 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdutils i386 1:2.32-0.1ubuntu1 [62.7 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 tar i386 1.30+dfsg-2 [265 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg i386 1.19.0.5ubuntu5 [1158 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.4-2 [185 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.4-2 [550 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 findutils i386 4.6.0+git+20180808-2 [307 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 grep i386 3.1-2ubuntu1 [158 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-4ubuntu1 [166 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 perl-modules-5.26 all 5.26.2-7 [2764 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 libperl5.26 i386 5.26.2-7 [3177 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 perl i386 5.26.2-7 [202 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 perl-base i386 5.26.2-7 [1493 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 bzip2 i386 1.0.6-9 [34.4 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libbz2-1.0 i386 1.0.6-9 [32.9 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libdb5.3 i386 5.3.28+dfsg1-0.1 [737 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 sed i386 4.5-1 [187 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libuuid1 i386 2.32-0.1ubuntu1 [20.6 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libblkid1 i386 2.32-0.1ubuntu1 [143 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libfdisk1 i386 2.32-0.1ubuntu1 [186 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-4ubuntu1 [141 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcre3 i386 2:8.39-11 [229 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libselinux1 i386 2.8-1build1 [73.2 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libmount1 i386 2.32-0.1ubuntu1 [152 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 libsmartcols1 i386 2.32-0.1ubuntu1 [94.0 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 fdisk i386 2.32-0.1ubuntu1 [118 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 util-linux i386 2.32-0.1ubuntu1 [943 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libdebconfclient0 i386 0.244ubuntu1 [6172 B] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 init-system-helpers all 1.54 [38.3 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 sysvinit-utils i386 2.88dsf-59.10ubuntu2 [19.3 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 liblz4-1 i386 1.8.2-1ubuntu1 [69.2 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libudev1 i386 239-7ubuntu9 [58.9 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 libzstd1 i386 1.3.5+dfsg-1ubuntu1 [224 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libapt-pkg5.0 i386 1.7.0 [889 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 debconf all 1.5.69 [121 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 adduser all 3.117ubuntu1 [163 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libgpg-error0 i386 1.32-1 [60.9 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcrypt20 i386 1.8.3-1ubuntu1 [401 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgv i386 2.2.8-3ubuntu1 [217 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 ubuntu-keyring all 2018.09.18.1 [22.3 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.14-2 [182 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 libunistring2 i386 0.9.10-1ubuntu1 [380 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libidn2-0 i386 2.0.5-1 [49.3 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libtasn1-6 i386 4.13-3 [38.8 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 libgnutls30 i386 3.5.19-1ubuntu1 [657 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 libseccomp2 i386 2.3.3-3ubuntu1 [35.6 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 apt i386 1.7.0 [1201 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 libapparmor1 i386 2.12-4ubuntu8 [32.0 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit1 i386 1:2.8.3-1ubuntu2 [40.1 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-1 i386 0~20171227-0.1 [25.2 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 libcryptsetup12 i386 2:2.0.4-2ubuntu2 [156 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main i386 libkmod2 i386 25-1ubuntu1 [48.3 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main i386 mount i386 2.32-0.1ubuntu1 [110 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-4ubuntu1 [108 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps7 i386 2:3.3.15-2ubuntu1 [33.6 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.15-2ubuntu1 [230 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main i386 systemd i386 239-7ubuntu9 [3068 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main i386 libsystemd0 i386 239-7ubuntu9 [229 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main i386 init i386 1.54 [6380 B] Get:82 http://ftpmaster.internal/ubuntu cosmic/main i386 systemd-sysv i386 239-7ubuntu9 [9396 B] Get:83 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.4-2 [9248 B] Get:84 http://ftpmaster.internal/ubuntu cosmic/main i386 libsepol1 i386 2.8-1 [276 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage-common all 2.8-1build1 [7000 B] Get:86 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage1 i386 2.8-1build1 [94.3 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.4-2 [11.7 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/universe i386 libncurses5 i386 6.1+20180210-4ubuntu1 [101 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-4ubuntu1 [128 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-4ubuntu1 [79.7 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main i386 libidn11 i386 1.33-2.2ubuntu1 [46.6 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main i386 readline-common all 7.0-5 [52.2 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main i386 libreadline7 i386 7.0-5 [127 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main i386 libslang2 i386 2.3.2-1ubuntu1 [426 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main i386 libsqlite3-0 i386 3.24.0-1 [541 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main i386 libssl1.1 i386 1.1.1-1ubuntu2 [1294 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main i386 openssl i386 1.1.1-1ubuntu2 [625 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main i386 libpng16-16 i386 1.6.34-2 [184 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main i386 multiarch-support i386 2.28-0ubuntu1 [6916 B] Get:101 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.31.1-6ubuntu1 [195 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.31.1-6ubuntu1 [3396 B] Get:103 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.31.1-6ubuntu1 [1986 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.31.1-6ubuntu1 [518 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main i386 libisl19 i386 0.20-2 [649 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp-8 i386 8.2.0-7ubuntu1 [7536 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp i386 4:8.2.0-1ubuntu1 [27.6 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main i386 libasan5 i386 8.2.0-7ubuntu1 [376 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main i386 libubsan1 i386 8.2.0-7ubuntu1 [138 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc-8-dev i386 8.2.0-7ubuntu1 [2306 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-8 i386 8.2.0-7ubuntu1 [8325 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc i386 4:8.2.0-1ubuntu1 [5268 B] Get:113 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++-8-dev i386 8.2.0-7ubuntu1 [1581 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main i386 g++-8 i386 8.2.0-7ubuntu1 [8436 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main i386 g++ i386 4:8.2.0-1ubuntu1 [1616 B] Get:116 http://ftpmaster.internal/ubuntu cosmic/main i386 make i386 4.2.1-1.2 [169 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg-dev all 1.19.0.5ubuntu5 [607 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/main i386 libdpkg-perl all 1.19.0.5ubuntu5 [211 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic/main i386 patch i386 2.7.6-3 [118 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:121 http://ftpmaster.internal/ubuntu cosmic/main i386 libasan4 i386 7.3.0-29ubuntu1 [361 kB] Get:122 http://ftpmaster.internal/ubuntu cosmic/main i386 libubsan0 i386 7.3.0-29ubuntu1 [141 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/main i386 libcilkrts5 i386 7.3.0-29ubuntu1 [47.3 kB] Get:124 http://ftpmaster.internal/ubuntu cosmic/universe i386 g++-7 i386 7.3.0-29ubuntu1 [7818 kB] Get:125 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7 i386 7.3.0-29ubuntu1 [7704 kB] Get:126 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++-7-dev i386 7.3.0-29ubuntu1 [1507 kB] Get:127 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc-7-dev i386 7.3.0-29ubuntu1 [2395 kB] Get:128 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp-7 i386 7.3.0-29ubuntu1 [6965 kB] Get:129 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7-base i386 7.3.0-29ubuntu1 [18.6 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.4-2 [2700 B] Get:131 http://ftpmaster.internal/ubuntu cosmic/main i386 pinentry-curses i386 1.1.0-1build2 [37.8 kB] Get:132 http://ftpmaster.internal/ubuntu cosmic/main i386 libnpth0 i386 1.6-1 [8032 B] Get:133 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg i386 2.2.8-3ubuntu1 [511 kB] Get:134 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgconf i386 2.2.8-3ubuntu1 [130 kB] Get:135 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg-agent i386 2.2.8-3ubuntu1 [248 kB] Get:136 http://ftpmaster.internal/ubuntu cosmic/universe i386 libargon2-0 i386 0~20171227-0.1 [4532 B] Get:137 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.4-2 [2696 B] Get:138 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:139 http://ftpmaster.internal/ubuntu cosmic/main i386 pkgbinarymangler all 143 [53.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.5 MB in 5s (21.2 MB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.28-0ubuntu1_i386.deb ... Unpacking libc6-dev:i386 (2.28-0ubuntu1) over (2.27-3ubuntu1) ... Preparing to unpack .../libc-dev-bin_2.28-0ubuntu1_i386.deb ... Unpacking libc-dev-bin (2.28-0ubuntu1) over (2.27-3ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.18.0-9.10_i386.deb ... Unpacking linux-libc-dev:i386 (4.18.0-9.10) over (4.15.0-20.21) ... Preparing to unpack .../libc6_2.28-0ubuntu1_i386.deb ... Unpacking libc6:i386 (2.28-0ubuntu1) over (2.27-3ubuntu1) ... Setting up libc6:i386 (2.28-0ubuntu1) ... (Reading database ... 12644 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-0ubuntu1_i386.deb ... Unpacking libc-bin (2.28-0ubuntu1) over (2.27-3ubuntu1) ... Setting up libc-bin (2.28-0ubuntu1) ... Updating /etc/nsswitch.conf to current default. (Reading database ... 12644 files and directories currently installed.) Preparing to unpack .../libquadmath0_8.2.0-7ubuntu1_i386.deb ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15524756 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-15524756 --arch=i386 --dist=cosmic-proposed --nolog 'lammps_0~20180822.gitb47e49223+dfsg1-2.dsc' Initiating build PACKAGEBUILD-15524756 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-137-generic #163-Ubuntu SMP Mon Sep 24 13:14:43 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-023.buildd +==============================================================================+ | lammps 0~20180822.gitb47e49223+dfsg1-2 (i386) 09 Oct 2018 20:37 | +==============================================================================+ Package: lammps Version: 0~20180822.gitb47e49223+dfsg1-2 Source Version: 0~20180822.gitb47e49223+dfsg1-2 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/lammps-lCfCct/lammps-0~20180822.gitb47e49223+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/lammps-lCfCct' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15524756/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- lammps_0~20180822.gitb47e49223+dfsg1-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-XICm6l/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-XICm6l/apt_archive ./ InRelease Get:2 copy:/<>/resolver-XICm6l/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-XICm6l/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-XICm6l/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-XICm6l/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (82.6 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-XICm6l/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13729 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libeigen3-dev, cmake, fortran-compiler, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, libpython-dev, libsymspg-dev, libavcodec-dev, libnetcdf-dev, libvtk6-dev, voro++-dev, ocl-icd-opencl-dev Filtered Build-Depends: debhelper (>= 11~), libeigen3-dev, cmake, fortran-compiler, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, libpython-dev, libsymspg-dev, libavcodec-dev, libnetcdf-dev, libvtk6-dev, voro++-dev, ocl-icd-opencl-dev dpkg-deb: building package 'sbuild-build-depends-lammps-dummy' in '/<>/resolver-wOgkhC/apt_archive/sbuild-build-depends-lammps-dummy.deb'. Ign:1 copy:/<>/resolver-wOgkhC/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wOgkhC/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-wOgkhC/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wOgkhC/apt_archive ./ Sources [310 B] Get:5 copy:/<>/resolver-wOgkhC/apt_archive ./ Packages [630 B] Fetched 3059 B in 0s (111 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install lammps build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data cython debhelper default-libmysqlclient-dev dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gdal-data gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base hdf5-helpers ibverbs-providers icu-devtools intltool-debian iso-codes libaec-dev libaec0 libaom0 libarchive-zip-perl libarchive13 libarmadillo-dev libarmadillo9 libarpack2 libarpack2-dev libasn1-8-heimdal libavahi-client3 libavahi-common-data libavahi-common3 libavcodec-dev libavcodec58 libavformat-dev libavformat58 libavutil-dev libavutil56 libblas-dev libblas3 libbluray2 libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcairo2 libcap2-bin libcharls-dev libcharls1 libchromaprint1 libcodec2-0.8.1 libcroco3 libcrystalhd3 libcups2 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5 libdatrie1 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libepsilon-dev libepsilon1 libevdev2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0 libgbm1 libgdal-dev libgdal20 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeos-3.6.2 libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-8-dev libgfortran5 libgif-dev libgif7 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps-dev libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgme0 libgraphite2-3 libgraphite2-dev libgsm1 libgssapi-krb5-2 libgssapi3-heimdal libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libhdf4-0-alt libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhdf5-mpi-dev libhdf5-openmpi-100 libhdf5-openmpi-dev libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libhyphen0 libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 libltdl-dev libltdl7 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libminizip-dev libminizip1 libmp3lame0 libmpdec2 libmpg123-0 libmtdev1 libmysqlclient-dev libmysqlclient20 libnetcdf-c++4 libnetcdf-cxx-legacy-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma-dev libnuma1 libodbc1 libogdi3.2 libogdi3.2-dev libogg-dev libogg0 libopengl0 libopenjp2-7 libopenjp2-7-dev libopenmpi-dev libopenmpi3 libopenmpt0 libopus0 liborc-0.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpmix2 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler79 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpsm-infinipath1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5opengl5 libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5sensors5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 librdmacm1 librhash0 libroken18-heimdal librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libshine3 libsigsegv2 libsm-dev libsm6 libsnappy1v5 libsodium23 libsoxr0 libspatialite-dev libspatialite7 libspeex1 libsqlite3-dev libssh-gcrypt-4 libssl1.0.0 libsuperlu-dev libsuperlu5 libswresample-dev libswresample3 libswscale-dev libswscale5 libsymspg-dev libsymspg1 libsz2 libtcl8.6 libthai-data libthai0 libtheora-dev libtheora0 libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtk8.6 libtool libtwolame0 liburiparser-dev liburiparser1 libuv1 libva-drm2 libva-x11-2 libva2 libvdpau1 libvorbis0a libvorbisenc2 libvorbisfile3 libvoro++1 libvpx5 libvtk6-dev libvtk6-java libvtk6-jni libvtk6.3 libvtk6.3-qt libwacom-common libwacom2 libwavpack1 libwayland-client0 libwayland-server0 libwebp-dev libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libx264-152 libx265-160 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm-dev libxxf86vm1 libzstd-dev libzvbi-common libzvbi0 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common ocl-icd-libopencl1 ocl-icd-opencl-dev odbcinst odbcinst1debian2 opencl-c-headers openmpi-bin openmpi-common openssh-client pkg-config po-debconf proj-data python python-asn1crypto python-attr python-autobahn python-automat python-cbor python-cffi-backend python-concurrent.futures python-configparser python-constantly python-cryptography python-enum34 python-future python-hyperlink python-idna python-incremental python-ipaddress python-lz4 python-minimal python-mpi4py python-nacl python-openssl python-pil python-pkg-resources python-pyasn1 python-pyasn1-modules python-qrcode python-service-identity python-six python-snappy python-trie python-trollius python-twisted python-twisted-bin python-twisted-core python-txaio python-u-msgpack python-ubjson python-vtk6 python-wsaccel python-zope.interface python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal shared-mime-info tcl tcl-dev tcl-vtk6 tcl8.6 tcl8.6-dev tk tk-dev tk8.6 tk8.6-dev ucf unixodbc-dev uuid-dev voro++-dev vtk6 x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff isoquery lrzip libitpp-dev liblapack-doc libbluray-bdj libboost-doc libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev firmware-crystalhd cups-common libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libeigen3-doc libmrpt-dev libfftw3-doc libgdal-doc libgeotiff-epsg geotiff-bin gdal-bin libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils krb5-doc krb5-user libvisual-0.4-plugins gstreamer1.0-tools libhdf4-doc hdf4-tools libhdf5-doc libhwloc-contrib-plugins libice-doc icu-doc liblcms2-utils libtool-doc liblzma-doc netcdf-bin netcdf-doc libmyodbc odbc-postgresql tdsodbc unixodbc-bin ogdi-bin openmpi-doc opus-tools pciutils postgresql-doc-10 proj-bin qt5-image-formats-plugins qtwayland5 qt5-qmltooling-plugins librsvg2-bin lm-sensors libsm-doc speex sqlite3-doc libsuperlu-doc gcj-jdk vtk6-doc vtk6-examples java-virtual-machine libx11-doc libxcb-doc libxerces-c-doc libxext-doc libxt-doc m4-doc apparmor less www-browser opencl-icd libpoclu-dev keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python-doc python-tk python-attr-doc python-cryptography-doc python-cryptography-vectors python-enum34-doc python-future-doc python-numpy python-nacl-doc python-openssl-doc python-openssl-dbg python-pil-doc python-pil-dbg python-setuptools python-trie-doc python-twisted-bin-dbg python-gtk2 python-glade2 python-qt3 python-wxgtk3.0 python-txaio-doc mayavi2 python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc tcl-doc tcl-tclreadline tcl8.6-doc tk-doc tk8.6-doc Recommended packages: python-dev curl | wget | lynx libaacs0 libpam-cap dbus libarchive-cpio-perl proj-bin libgdk-pixbuf2.0-bin xdg-user-dirs gstreamer1.0-plugins-base javascript-common krb5-locales libcoarrays-openmpi-dev libpng-tools poppler-data publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme geoclue-2.0 libgl1-mesa-glx librsvg2-common libsasl2-modules va-driver-all | va-driver vdpau-driver-all | vdpau-driver libwacom-bin xauth libmail-sendmail-perl python-click python-olefile python-pam python-serial xterm | x-terminal-emulator The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data cython debhelper default-libmysqlclient-dev dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gdal-data gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base hdf5-helpers ibverbs-providers icu-devtools intltool-debian iso-codes libaec-dev libaec0 libaom0 libarchive-zip-perl libarchive13 libarmadillo-dev libarmadillo9 libarpack2 libarpack2-dev libasn1-8-heimdal libavahi-client3 libavahi-common-data libavahi-common3 libavcodec-dev libavcodec58 libavformat-dev libavformat58 libavutil-dev libavutil56 libblas-dev libblas3 libbluray2 libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcairo2 libcap2-bin libcharls-dev libcharls1 libchromaprint1 libcodec2-0.8.1 libcroco3 libcrystalhd3 libcups2 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5 libdatrie1 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libepsilon-dev libepsilon1 libevdev2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0 libgbm1 libgdal-dev libgdal20 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeos-3.6.2 libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-8-dev libgfortran5 libgif-dev libgif7 libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps-dev libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgme0 libgraphite2-3 libgraphite2-dev libgsm1 libgssapi-krb5-2 libgssapi3-heimdal libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libhdf4-0-alt libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhdf5-mpi-dev libhdf5-openmpi-100 libhdf5-openmpi-dev libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libhyphen0 libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 libltdl-dev libltdl7 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libminizip-dev libminizip1 libmp3lame0 libmpdec2 libmpg123-0 libmtdev1 libmysqlclient-dev libmysqlclient20 libnetcdf-c++4 libnetcdf-cxx-legacy-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma-dev libnuma1 libodbc1 libogdi3.2 libogdi3.2-dev libogg-dev libogg0 libopengl0 libopenjp2-7 libopenjp2-7-dev libopenmpi-dev libopenmpi3 libopenmpt0 libopus0 liborc-0.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpmix2 libpng-dev libpoppler-dev libpoppler-private-dev libpoppler79 libpq-dev libpq5 libproj-dev libproj13 libpsl5 libpsm-infinipath1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5opengl5 libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5sensors5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 librdmacm1 librhash0 libroken18-heimdal librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libshine3 libsigsegv2 libsm-dev libsm6 libsnappy1v5 libsodium23 libsoxr0 libspatialite-dev libspatialite7 libspeex1 libsqlite3-dev libssh-gcrypt-4 libssl1.0.0 libsuperlu-dev libsuperlu5 libswresample-dev libswresample3 libswscale-dev libswscale5 libsymspg-dev libsymspg1 libsz2 libtcl8.6 libthai-data libthai0 libtheora-dev libtheora0 libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtk8.6 libtool libtwolame0 liburiparser-dev liburiparser1 libuv1 libva-drm2 libva-x11-2 libva2 libvdpau1 libvorbis0a libvorbisenc2 libvorbisfile3 libvoro++1 libvpx5 libvtk6-dev libvtk6-java libvtk6-jni libvtk6.3 libvtk6.3-qt libwacom-common libwacom2 libwavpack1 libwayland-client0 libwayland-server0 libwebp-dev libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libx264-152 libx265-160 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm-dev libxxf86vm1 libzstd-dev libzvbi-common libzvbi0 m4 man-db mesa-common-dev mime-support mpi-default-bin mpi-default-dev mysql-common ocl-icd-libopencl1 ocl-icd-opencl-dev odbcinst odbcinst1debian2 opencl-c-headers openmpi-bin openmpi-common openssh-client pkg-config po-debconf proj-data python python-asn1crypto python-attr python-autobahn python-automat python-cbor python-cffi-backend python-concurrent.futures python-configparser python-constantly python-cryptography python-enum34 python-future python-hyperlink python-idna python-incremental python-ipaddress python-lz4 python-minimal python-mpi4py python-nacl python-openssl python-pil python-pkg-resources python-pyasn1 python-pyasn1-modules python-qrcode python-service-identity python-six python-snappy python-trie python-trollius python-twisted python-twisted-bin python-twisted-core python-txaio python-u-msgpack python-ubjson python-vtk6 python-wsaccel python-zope.interface python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal sbuild-build-depends-lammps-dummy shared-mime-info tcl tcl-dev tcl-vtk6 tcl8.6 tcl8.6-dev tk tk-dev tk8.6 tk8.6-dev ucf unixodbc-dev uuid-dev voro++-dev vtk6 x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-scrnsaver-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 542 newly installed, 0 to remove and 0 not upgraded. Need to get 312 MB of archives. After this operation, 1495 MB of additional disk space will be used. Get:1 copy:/<>/resolver-wOgkhC/apt_archive ./ sbuild-build-depends-lammps-dummy 0.invalid.0 [960 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython3.6-minimal i386 3.6.7~rc1-1 [534 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 libexpat1 i386 2.2.6-1 [84.8 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 python3.6-minimal i386 3.6.7~rc1-1 [1606 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 python3-minimal i386 3.6.6-1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libmpdec2 i386 2.4.2-2 [80.0 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython3.6-stdlib i386 3.6.7~rc1-1 [1723 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 python3.6 i386 3.6.7~rc1-1 [196 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython3-stdlib i386 3.6.6-1 [7144 B] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 python3 i386 3.6.6-1 [33.5 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libxau6 i386 1:1.0.8-1 [8352 B] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.9.1-1 [48.8 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdmcp6 i386 1:1.1.2-3 [11.1 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb1 i386 1.13-3 [50.1 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libx11-data all 2:1.6.6-1 [113 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 libx11-6 i386 2:1.6.6-1 [594 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libxext6 i386 2:1.3.3-1 [31.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.4-2 [1039 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libogg0 i386 1.3.2-1 [16.2 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-0 i386 2.58.1-2 [1246 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap2-bin i386 1:2.25-1.2 [20.8 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 libgstreamer1.0-0 i386 1.14.2-2 [892 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 liborc-0.4-0 i386 1:0.4.28-3 [148 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 iso-codes all 3.79-1 [2565 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 libgstreamer-plugins-base1.0-0 i386 1.14.2-1ubuntu1 [703 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 libhyphen0 i386 2.8.8-5 [26.4 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 60.2-6ubuntu1 [8192 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libjpeg-turbo8 i386 2.0.0-0ubuntu2 [126 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libjpeg8 i386 8c-2ubuntu8 [2188 B] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 libdouble-conversion1 i386 2.0.1-5 [36.8 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libqt5core5a i386 5.11.1+dfsg-7ubuntu1 [2627 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libfreetype6 i386 2.8.1-2ubuntu2 [351 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 ucf all 3.0038 [50.5 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 fonts-dejavu-core all 2.37-1 [1041 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libfontconfig1 i386 2.13.0-5ubuntu3 [122 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 fontconfig i386 2.13.0-5ubuntu3 [170 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-common all 2.4.94-1 [4924 B] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm2 i386 2.4.94-1 [33.1 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libglvnd0 i386 1.1.0-1 [41.0 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libwayland-server0 i386 1.16.0-1ubuntu1 [30.8 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 libgbm1 i386 18.2.2-0ubuntu1 [26.0 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 libglapi-mesa i386 18.2.2-0ubuntu1 [24.3 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 libwayland-client0 i386 1.16.0-1ubuntu1 [24.1 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 libx11-xcb1 i386 2:1.6.6-1 [9252 B] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri2-0 i386 1.13-3 [7308 B] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri3-0 i386 1.13-3 [6972 B] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-present0 i386 1.13-3 [5748 B] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-sync1 i386 1.13-3 [9248 B] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-xfixes0 i386 1.13-3 [9804 B] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libxshmfence1 i386 1.3-1 [5180 B] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libegl-mesa0 i386 18.2.2-0ubuntu1 [94.8 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 libegl1 i386 1.1.0-1 [33.5 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-glx0 i386 1.13-3 [23.9 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdamage1 i386 1:1.1.4-3 [7090 B] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 libxfixes3 i386 1:5.0.3-1 [11.2 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 libxxf86vm1 i386 1:1.1.4-1 [11.3 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-amdgpu1 i386 2.4.94-1 [20.0 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libpciaccess0 i386 0.14-1 [20.2 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-intel1 i386 2.4.94-1 [63.3 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-nouveau2 i386 2.4.94-1 [18.2 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-radeon1 i386 2.4.94-1 [22.8 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 libelf1 i386 0.170-0.5 [50.7 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 libedit2 i386 3.1-20180525-1 [82.9 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 libllvm7 i386 1:7-3 [17.6 MB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 libsensors4 i386 1:3.4.0-4 [29.3 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 libgl1-mesa-dri i386 18.2.2-0ubuntu1 [6951 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 libglx-mesa0 i386 18.2.2-0ubuntu1 [143 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 libglx0 i386 1.1.0-1 [29.5 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main i386 libgl1 i386 1.1.0-1 [80.9 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main i386 libgraphite2-3 i386 1.3.12-1 [76.9 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main i386 libharfbuzz0b i386 1.8.8-2 [278 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main i386 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main i386 libice6 i386 2:1.0.9-2 [42.6 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main i386 libevdev2 i386 1.5.9+dfsg-2 [27.6 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main i386 libmtdev1 i386 1.1.5-1ubuntu3 [14.2 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main i386 libgudev-1.0-0 i386 1:232-2 [14.2 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main i386 libwacom-common all 0.30-1 [37.8 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main i386 libwacom2 i386 0.30-1 [19.1 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main i386 libinput-bin i386 1.12.1-1 [12.7 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main i386 libinput10 i386 1.12.1-1 [112 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main i386 libdbus-1-3 i386 1.12.10-1ubuntu2 [189 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main i386 libqt5dbus5 i386 5.11.1+dfsg-7ubuntu1 [226 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main i386 libqt5network5 i386 5.11.1+dfsg-7ubuntu1 [743 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main i386 libsm6 i386 2:1.2.2-1 [14.8 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-icccm4 i386 0.4.1-1ubuntu1 [10.8 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-shm0 i386 1.13-3 [5780 B] Get:92 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-util1 i386 0.4.0-0ubuntu3 [11.5 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-image0 i386 0.4.0-1build1 [12.7 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-keysyms1 i386 0.4.0-1 [8562 B] Get:95 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-randr0 i386 1.13-3 [17.9 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-render0 i386 1.13-3 [15.9 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-render-util0 i386 0.3.9-1 [9724 B] Get:98 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-shape0 i386 1.13-3 [6152 B] Get:99 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-xinerama0 i386 1.13-3 [5464 B] Get:100 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-xkb1 i386 1.13-3 [31.2 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main i386 libxi6 i386 2:1.7.9-1 [31.7 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main i386 xkb-data all 2.23.1-1ubuntu1 [325 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main i386 libxkbcommon0 i386 0.8.2-1 [103 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main i386 libxkbcommon-x11-0 i386 0.8.2-1 [14.6 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main i386 libxrender1 i386 1:0.9.10-1 [19.9 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main i386 libqt5gui5 i386 5.11.1+dfsg-7ubuntu1 [4703 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt5positioning5 i386 5.11.1+dfsg-4 [209 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main i386 libavahi-common-data i386 0.7-4ubuntu2 [22.2 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main i386 libavahi-common3 i386 0.7-4ubuntu2 [23.1 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main i386 libavahi-client3 i386 0.7-4ubuntu2 [27.2 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5support0 i386 1.16-2ubuntu1 [32.5 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main i386 libk5crypto3 i386 1.16-2ubuntu1 [89.9 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main i386 libkeyutils1 i386 1.5.9-9.3 [9896 B] Get:114 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-3 i386 1.16-2ubuntu1 [303 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi-krb5-2 i386 1.16-2ubuntu1 [132 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/main i386 libcups2 i386 2.2.8-5ubuntu1 [225 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/main i386 libqt5widgets5 i386 5.11.1+dfsg-7ubuntu1 [2508 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/main i386 libqt5printsupport5 i386 5.11.1+dfsg-7ubuntu1 [206 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt5qml5 i386 5.11.1-6 [1364 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt5quick5 i386 5.11.1-6 [1403 kB] Get:121 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt5sensors5 i386 5.11.1-3 [122 kB] Get:122 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt5webchannel5 i386 5.11.1-3 [53.0 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/main i386 libwebp6 i386 0.6.1-2 [197 kB] Get:124 http://ftpmaster.internal/ubuntu cosmic/main i386 libbrotli1 i386 1.0.6-1 [266 kB] Get:125 http://ftpmaster.internal/ubuntu cosmic/main i386 libwoff1 i386 1.0.2-1 [45.5 kB] Get:126 http://ftpmaster.internal/ubuntu cosmic/main i386 libxml2 i386 2.9.4+dfsg1-7ubuntu1 [659 kB] Get:127 http://ftpmaster.internal/ubuntu cosmic/main i386 libxslt1.1 i386 1.1.32-2 [160 kB] Get:128 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt5webkit5 i386 5.212.0~alpha2-12ubuntu1 [12.2 MB] Get:129 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2.7-minimal i386 2.7.15-4ubuntu4 [335 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic/main i386 python2.7-minimal i386 2.7.15-4ubuntu4 [1318 kB] Get:131 http://ftpmaster.internal/ubuntu cosmic/main i386 python2-minimal i386 2.7.15-3 [28.1 kB] Get:132 http://ftpmaster.internal/ubuntu cosmic/main i386 python-minimal i386 2.7.15-3 [5996 B] Get:133 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2.7-stdlib i386 2.7.15-4ubuntu4 [1932 kB] Get:134 http://ftpmaster.internal/ubuntu cosmic/main i386 python2.7 i386 2.7.15-4ubuntu4 [239 kB] Get:135 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2-stdlib i386 2.7.15-3 [7728 B] Get:136 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython-stdlib i386 2.7.15-3 [5824 B] Get:137 http://ftpmaster.internal/ubuntu cosmic/main i386 python2 i386 2.7.15-3 [26.5 kB] Get:138 http://ftpmaster.internal/ubuntu cosmic/main i386 python i386 2.7.15-3 [7832 B] Get:139 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic-mgc i386 1:5.34-2 [197 kB] Get:140 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic1 i386 1:5.34-2 [78.8 kB] Get:141 http://ftpmaster.internal/ubuntu cosmic/main i386 file i386 1:5.34-2 [22.8 kB] Get:142 http://ftpmaster.internal/ubuntu cosmic/main i386 libgirepository-1.0-1 i386 1.58.0-1 [89.3 kB] Get:143 http://ftpmaster.internal/ubuntu cosmic/main i386 gir1.2-glib-2.0 i386 1.58.0-1 [132 kB] Get:144 http://ftpmaster.internal/ubuntu cosmic/main i386 libfribidi0 i386 1.0.5-3 [26.6 kB] Get:145 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-data all 2.58.1-2 [5476 B] Get:146 http://ftpmaster.internal/ubuntu cosmic/main i386 shared-mime-info i386 1.10-1 [430 kB] Get:147 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext-base i386 0.19.8.1-8 [51.1 kB] Get:148 http://ftpmaster.internal/ubuntu cosmic/main i386 libnuma1 i386 2.0.11-2.2 [23.8 kB] Get:149 http://ftpmaster.internal/ubuntu cosmic/main i386 libpsl5 i386 0.20.2-1 [49.9 kB] Get:150 http://ftpmaster.internal/ubuntu cosmic/main i386 libssl1.0.0 i386 1.0.2n-1ubuntu6 [914 kB] Get:151 http://ftpmaster.internal/ubuntu cosmic/main i386 openssh-client i386 1:7.7p1-4 [682 kB] Get:152 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:153 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:154 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:155 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:156 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.16.1-1.1ubuntu1 [522 kB] Get:157 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-8 [412 kB] Get:158 http://ftpmaster.internal/ubuntu cosmic/main i386 cmake-data all 3.12.1-1 [1419 kB] Get:159 http://ftpmaster.internal/ubuntu cosmic/main i386 liblzo2-2 i386 2.10-0.1 [52.8 kB] Get:160 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive13 i386 3.2.2-5 [336 kB] Get:161 http://ftpmaster.internal/ubuntu cosmic/main i386 libroken18-heimdal i386 7.5.0+dfsg-2 [44.8 kB] Get:162 http://ftpmaster.internal/ubuntu cosmic/main i386 libasn1-8-heimdal i386 7.5.0+dfsg-2 [183 kB] Get:163 http://ftpmaster.internal/ubuntu cosmic/main i386 libheimbase1-heimdal i386 7.5.0+dfsg-2 [32.2 kB] Get:164 http://ftpmaster.internal/ubuntu cosmic/main i386 libhcrypto4-heimdal i386 7.5.0+dfsg-2 [92.6 kB] Get:165 http://ftpmaster.internal/ubuntu cosmic/main i386 libwind0-heimdal i386 7.5.0+dfsg-2 [48.4 kB] Get:166 http://ftpmaster.internal/ubuntu cosmic/main i386 libhx509-5-heimdal i386 7.5.0+dfsg-2 [118 kB] Get:167 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-26-heimdal i386 7.5.0+dfsg-2 [231 kB] Get:168 http://ftpmaster.internal/ubuntu cosmic/main i386 libheimntlm0-heimdal i386 7.5.0+dfsg-2 [16.3 kB] Get:169 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi3-heimdal i386 7.5.0+dfsg-2 [106 kB] Get:170 http://ftpmaster.internal/ubuntu cosmic/main i386 libsasl2-modules-db i386 2.1.27~101-g0780600+dfsg-3ubuntu2 [15.6 kB] Get:171 http://ftpmaster.internal/ubuntu cosmic/main i386 libsasl2-2 i386 2.1.27~101-g0780600+dfsg-3ubuntu2 [52.8 kB] Get:172 http://ftpmaster.internal/ubuntu cosmic/main i386 libldap-common all 2.4.46+dfsg-5ubuntu1 [16.6 kB] Get:173 http://ftpmaster.internal/ubuntu cosmic/main i386 libldap-2.4-2 i386 2.4.46+dfsg-5ubuntu1 [167 kB] Get:174 http://ftpmaster.internal/ubuntu cosmic/main i386 libnghttp2-14 i386 1.32.1-1build1 [82.9 kB] Get:175 http://ftpmaster.internal/ubuntu cosmic/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [58.3 kB] Get:176 http://ftpmaster.internal/ubuntu cosmic/main i386 libcurl4 i386 7.61.0-1ubuntu2 [240 kB] Get:177 http://ftpmaster.internal/ubuntu cosmic/main i386 libjsoncpp1 i386 1.7.4-3 [82.7 kB] Get:178 http://ftpmaster.internal/ubuntu cosmic/main i386 librhash0 i386 1.3.6-2 [90.7 kB] Get:179 http://ftpmaster.internal/ubuntu cosmic/main i386 libuv1 i386 1.22.0-3ubuntu1 [73.7 kB] Get:180 http://ftpmaster.internal/ubuntu cosmic/main i386 cmake i386 3.12.1-1 [3654 kB] Get:181 http://ftpmaster.internal/ubuntu cosmic/universe i386 cython i386 0.28.4-1 [1864 kB] Get:182 http://ftpmaster.internal/ubuntu cosmic/main i386 libtool all 2.4.6-4 [196 kB] Get:183 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 19 [16.1 kB] Get:184 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive-zip-perl all 1.63-1 [84.8 kB] Get:185 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:186 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:187 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:188 http://ftpmaster.internal/ubuntu cosmic/main i386 dwz i386 0.12-2 [80.4 kB] Get:189 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:190 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-8 [904 kB] Get:191 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:192 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:193 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.3.2ubuntu1 [883 kB] Get:194 http://ftpmaster.internal/ubuntu cosmic/main i386 mysql-common all 5.8+1.0.4 [7308 B] Get:195 http://ftpmaster.internal/ubuntu cosmic/main i386 libmysqlclient20 i386 5.7.23-2ubuntu1 [806 kB] Get:196 http://ftpmaster.internal/ubuntu cosmic/main i386 zlib1g-dev i386 1:1.2.11.dfsg-0ubuntu2 [178 kB] Get:197 http://ftpmaster.internal/ubuntu cosmic/main i386 libmysqlclient-dev i386 5.7.23-2ubuntu1 [1162 kB] Get:198 http://ftpmaster.internal/ubuntu cosmic/main i386 default-libmysqlclient-dev i386 1.0.4 [3736 B] Get:199 http://ftpmaster.internal/ubuntu cosmic/universe i386 gdal-data all 2.3.1+dfsg-3build1 [511 kB] Get:200 http://ftpmaster.internal/ubuntu cosmic/main i386 libgfortran5 i386 8.2.0-7ubuntu1 [556 kB] Get:201 http://ftpmaster.internal/ubuntu cosmic/main i386 libgfortran-8-dev i386 8.2.0-7ubuntu1 [609 kB] Get:202 http://ftpmaster.internal/ubuntu cosmic/main i386 gfortran-8 i386 8.2.0-7ubuntu1 [7986 kB] Get:203 http://ftpmaster.internal/ubuntu cosmic/main i386 gfortran i386 4:8.2.0-1ubuntu1 [1372 B] Get:204 http://ftpmaster.internal/ubuntu cosmic/main i386 gir1.2-harfbuzz-0.0 i386 1.8.8-2 [19.3 kB] Get:205 http://ftpmaster.internal/ubuntu cosmic/universe i386 hdf5-helpers i386 1.10.0-patch1+docs-4build2 [12.2 kB] Get:206 http://ftpmaster.internal/ubuntu cosmic/main i386 libnl-3-200 i386 3.4.0-1 [56.6 kB] Get:207 http://ftpmaster.internal/ubuntu cosmic/main i386 libnl-route-3-200 i386 3.4.0-1 [156 kB] Get:208 http://ftpmaster.internal/ubuntu cosmic/main i386 libibverbs1 i386 19.0-1 [52.2 kB] Get:209 http://ftpmaster.internal/ubuntu cosmic/main i386 ibverbs-providers i386 19.0-1 [187 kB] Get:210 http://ftpmaster.internal/ubuntu cosmic/main i386 icu-devtools i386 60.2-6ubuntu1 [189 kB] Get:211 http://ftpmaster.internal/ubuntu cosmic/universe i386 libaec0 i386 1.0.2-1 [21.6 kB] Get:212 http://ftpmaster.internal/ubuntu cosmic/universe i386 libaom0 i386 1.0.0-2 [855 kB] Get:213 http://ftpmaster.internal/ubuntu cosmic/main i386 libblas3 i386 3.8.0-1build1 [131 kB] Get:214 http://ftpmaster.internal/ubuntu cosmic/main i386 liblapack3 i386 3.8.0-1build1 [1961 kB] Get:215 http://ftpmaster.internal/ubuntu cosmic/universe i386 libarpack2 i386 3.6.2-1 [91.5 kB] Get:216 http://ftpmaster.internal/ubuntu cosmic/universe i386 libsuperlu5 i386 5.2.1+dfsg1-3build1 [158 kB] Get:217 http://ftpmaster.internal/ubuntu cosmic/universe i386 libarmadillo9 i386 1:9.100.5+dfsg-1 [86.9 kB] Get:218 http://ftpmaster.internal/ubuntu cosmic/main i386 libblas-dev i386 3.8.0-1build1 [137 kB] Get:219 http://ftpmaster.internal/ubuntu cosmic/main i386 liblapack-dev i386 3.8.0-1build1 [2022 kB] Get:220 http://ftpmaster.internal/ubuntu cosmic/universe i386 libarpack2-dev i386 3.6.2-1 [104 kB] Get:221 http://ftpmaster.internal/ubuntu cosmic/universe i386 libsz2 i386 1.0.2-1 [5196 B] Get:222 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhdf5-100 i386 1.10.0-patch1+docs-4build2 [1230 kB] Get:223 http://ftpmaster.internal/ubuntu cosmic/main i386 libjpeg-turbo8-dev i386 2.0.0-0ubuntu2 [257 kB] Get:224 http://ftpmaster.internal/ubuntu cosmic/main i386 libjpeg8-dev i386 8c-2ubuntu8 [1546 B] Get:225 http://ftpmaster.internal/ubuntu cosmic/main i386 libjpeg-dev i386 8c-2ubuntu8 [1544 B] Get:226 http://ftpmaster.internal/ubuntu cosmic/universe i386 libaec-dev i386 1.0.2-1 [19.8 kB] Get:227 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhdf5-cpp-100 i386 1.10.0-patch1+docs-4build2 [119 kB] Get:228 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhdf5-dev i386 1.10.0-patch1+docs-4build2 [2604 kB] Get:229 http://ftpmaster.internal/ubuntu cosmic/universe i386 libsuperlu-dev i386 5.2.1+dfsg1-3build1 [16.3 kB] Get:230 http://ftpmaster.internal/ubuntu cosmic/universe i386 libarmadillo-dev i386 1:9.100.5+dfsg-1 [353 kB] Get:231 http://ftpmaster.internal/ubuntu cosmic/universe i386 libva2 i386 2.2.0-1 [52.0 kB] Get:232 http://ftpmaster.internal/ubuntu cosmic/universe i386 libva-drm2 i386 2.2.0-1 [7060 B] Get:233 http://ftpmaster.internal/ubuntu cosmic/universe i386 libva-x11-2 i386 2.2.0-1 [12.2 kB] Get:234 http://ftpmaster.internal/ubuntu cosmic/main i386 libvdpau1 i386 1.1.1-8ubuntu1 [24.5 kB] Get:235 http://ftpmaster.internal/ubuntu cosmic/universe i386 libavutil56 i386 7:4.0.2-2 [205 kB] Get:236 http://ftpmaster.internal/ubuntu cosmic/main i386 libpixman-1-0 i386 0.34.0-2 [235 kB] Get:237 http://ftpmaster.internal/ubuntu cosmic/main i386 libcairo2 i386 1.15.12-1 [638 kB] Get:238 http://ftpmaster.internal/ubuntu cosmic/universe i386 libcodec2-0.8.1 i386 0.8.1-1 [231 kB] Get:239 http://ftpmaster.internal/ubuntu cosmic/universe i386 libcrystalhd3 i386 1:0.0~git20110715.fdd2f19-13 [50.2 kB] Get:240 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgsm1 i386 1.0.13-4build1 [24.2 kB] Get:241 http://ftpmaster.internal/ubuntu cosmic/main i386 libmp3lame0 i386 3.100-2build1 [134 kB] Get:242 http://ftpmaster.internal/ubuntu cosmic/universe i386 libopenjp2-7 i386 2.3.0-1 [154 kB] Get:243 http://ftpmaster.internal/ubuntu cosmic/main i386 libopus0 i386 1.3~beta+20180518-1 [186 kB] Get:244 http://ftpmaster.internal/ubuntu cosmic/main i386 libjbig0 i386 2.1-3.1build1 [27.3 kB] Get:245 http://ftpmaster.internal/ubuntu cosmic/main i386 libtiff5 i386 4.0.9-6 [163 kB] Get:246 http://ftpmaster.internal/ubuntu cosmic/main i386 libgdk-pixbuf2.0-common all 2.38.0+dfsg-6 [6052 B] Get:247 http://ftpmaster.internal/ubuntu cosmic/main i386 libgdk-pixbuf2.0-0 i386 2.38.0+dfsg-6 [180 kB] Get:248 http://ftpmaster.internal/ubuntu cosmic/main i386 libthai-data all 0.1.28-1 [134 kB] Get:249 http://ftpmaster.internal/ubuntu cosmic/main i386 libdatrie1 i386 0.2.12-1 [19.8 kB] Get:250 http://ftpmaster.internal/ubuntu cosmic/main i386 libthai0 i386 0.1.28-1 [19.1 kB] Get:251 http://ftpmaster.internal/ubuntu cosmic/main i386 libpango-1.0-0 i386 1.42.4-3 [158 kB] Get:252 http://ftpmaster.internal/ubuntu cosmic/main i386 libpangoft2-1.0-0 i386 1.42.4-3 [38.3 kB] Get:253 http://ftpmaster.internal/ubuntu cosmic/main i386 libpangocairo-1.0-0 i386 1.42.4-3 [24.7 kB] Get:254 http://ftpmaster.internal/ubuntu cosmic/main i386 librsvg2-2 i386 2.40.20-3 [109 kB] Get:255 http://ftpmaster.internal/ubuntu cosmic/universe i386 libshine3 i386 3.1.1-2 [22.4 kB] Get:256 http://ftpmaster.internal/ubuntu cosmic/main i386 libsnappy1v5 i386 1.1.7-1 [16.9 kB] Get:257 http://ftpmaster.internal/ubuntu cosmic/main i386 libspeex1 i386 1.2~rc1.2-1ubuntu2 [96.1 kB] Get:258 http://ftpmaster.internal/ubuntu cosmic/main i386 libsoxr0 i386 0.1.2-3 [69.1 kB] Get:259 http://ftpmaster.internal/ubuntu cosmic/universe i386 libswresample3 i386 7:4.0.2-2 [61.0 kB] Get:260 http://ftpmaster.internal/ubuntu cosmic/main i386 libtheora0 i386 1.1.1+dfsg.1-14 [164 kB] Get:261 http://ftpmaster.internal/ubuntu cosmic/main i386 libtwolame0 i386 0.3.13-4 [46.0 kB] Get:262 http://ftpmaster.internal/ubuntu cosmic/main i386 libvorbis0a i386 1.3.6-1 [84.5 kB] Get:263 http://ftpmaster.internal/ubuntu cosmic/main i386 libvorbisenc2 i386 1.3.6-1 [64.4 kB] Get:264 http://ftpmaster.internal/ubuntu cosmic/main i386 libvpx5 i386 1.7.0-3 [747 kB] Get:265 http://ftpmaster.internal/ubuntu cosmic/main i386 libwavpack1 i386 5.1.0-4 [81.9 kB] Get:266 http://ftpmaster.internal/ubuntu cosmic/main i386 libwebpmux3 i386 0.6.1-2 [21.0 kB] Get:267 http://ftpmaster.internal/ubuntu cosmic/universe i386 libx264-152 i386 2:0.152.2854+gite9a5903-2build1 [894 kB] Get:268 http://ftpmaster.internal/ubuntu cosmic/universe i386 libx265-160 i386 2.8-4 [612 kB] Get:269 http://ftpmaster.internal/ubuntu cosmic/universe i386 libxvidcore4 i386 2:1.3.5-1 [198 kB] Get:270 http://ftpmaster.internal/ubuntu cosmic/universe i386 libzvbi-common all 0.2.35-13 [32.1 kB] Get:271 http://ftpmaster.internal/ubuntu cosmic/universe i386 libzvbi0 i386 0.2.35-13 [239 kB] Get:272 http://ftpmaster.internal/ubuntu cosmic/universe i386 libavcodec58 i386 7:4.0.2-2 [4598 kB] Get:273 http://ftpmaster.internal/ubuntu cosmic/universe i386 libavutil-dev i386 7:4.0.2-2 [323 kB] Get:274 http://ftpmaster.internal/ubuntu cosmic/universe i386 libswresample-dev i386 7:4.0.2-2 [74.9 kB] Get:275 http://ftpmaster.internal/ubuntu cosmic/universe i386 libavcodec-dev i386 7:4.0.2-2 [5186 kB] Get:276 http://ftpmaster.internal/ubuntu cosmic/universe i386 libbluray2 i386 1:1.0.2-3 [157 kB] Get:277 http://ftpmaster.internal/ubuntu cosmic/universe i386 libchromaprint1 i386 1.4.3-2build1 [41.0 kB] Get:278 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgme0 i386 0.6.2-1 [126 kB] Get:279 http://ftpmaster.internal/ubuntu cosmic/main i386 libmpg123-0 i386 1.25.10-2 [129 kB] Get:280 http://ftpmaster.internal/ubuntu cosmic/main i386 libvorbisfile3 i386 1.3.6-1 [18.7 kB] Get:281 http://ftpmaster.internal/ubuntu cosmic/universe i386 libopenmpt0 i386 0.3.11-1 [604 kB] Get:282 http://ftpmaster.internal/ubuntu cosmic/main i386 libssh-gcrypt-4 i386 0.8.1-1 [197 kB] Get:283 http://ftpmaster.internal/ubuntu cosmic/universe i386 libavformat58 i386 7:4.0.2-2 [1075 kB] Get:284 http://ftpmaster.internal/ubuntu cosmic/universe i386 libavformat-dev i386 7:4.0.2-2 [1302 kB] Get:285 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost1.67-dev i386 1.67.0-7 [8364 kB] Get:286 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost-dev i386 1.67.0.0ubuntu1 [3136 B] Get:287 http://ftpmaster.internal/ubuntu cosmic/universe i386 libcharls1 i386 1.1.0+dfsg-2 [58.0 kB] Get:288 http://ftpmaster.internal/ubuntu cosmic/universe i386 libcharls-dev i386 1.1.0+dfsg-2 [20.4 kB] Get:289 http://ftpmaster.internal/ubuntu cosmic/main i386 libcurl3-gnutls i386 7.61.0-1ubuntu2 [237 kB] Get:290 http://ftpmaster.internal/ubuntu cosmic/main i386 libcurl4-gnutls-dev i386 7.61.0-1ubuntu2 [329 kB] Get:291 http://ftpmaster.internal/ubuntu cosmic/universe i386 libdap25 i386 3.19.1-2build1 [461 kB] Get:292 http://ftpmaster.internal/ubuntu cosmic/universe i386 libdapserver7v5 i386 3.19.1-2build1 [22.8 kB] Get:293 http://ftpmaster.internal/ubuntu cosmic/universe i386 libdapclient6v5 i386 3.19.1-2build1 [99.0 kB] Get:294 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu-le-hb0 i386 1.0.3+git161113-5 [15.7 kB] Get:295 http://ftpmaster.internal/ubuntu cosmic/main i386 libiculx60 i386 60.2-6ubuntu1 [19.7 kB] Get:296 http://ftpmaster.internal/ubuntu cosmic/main i386 libharfbuzz-icu0 i386 1.8.8-2 [6132 B] Get:297 http://ftpmaster.internal/ubuntu cosmic/main i386 libharfbuzz-gobject0 i386 1.8.8-2 [12.7 kB] Get:298 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-bin i386 2.58.1-2 [75.2 kB] Get:299 http://ftpmaster.internal/ubuntu cosmic/main i386 python3-lib2to3 all 3.6.6-1 [76.9 kB] Get:300 http://ftpmaster.internal/ubuntu cosmic/main i386 python3-distutils all 3.6.6-1 [141 kB] Get:301 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-dev-bin i386 2.58.1-2 [104 kB] Get:302 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcre16-3 i386 2:8.39-11 [148 kB] Get:303 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcre32-3 i386 2:8.39-11 [140 kB] Get:304 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcrecpp0v5 i386 2:8.39-11 [16.7 kB] Get:305 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcre3-dev i386 2:8.39-11 [546 kB] Get:306 http://ftpmaster.internal/ubuntu cosmic/main i386 pkg-config i386 0.29.1-0ubuntu2 [45.8 kB] Get:307 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-dev i386 2.58.1-2 [1510 kB] Get:308 http://ftpmaster.internal/ubuntu cosmic/main i386 libgraphite2-dev i386 1.3.12-1 [14.7 kB] Get:309 http://ftpmaster.internal/ubuntu cosmic/main i386 libharfbuzz-dev i386 1.8.8-2 [365 kB] Get:310 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu-le-hb-dev i386 1.0.3+git161113-5 [31.2 kB] Get:311 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu-dev i386 60.2-6ubuntu1 [9073 kB] Get:312 http://ftpmaster.internal/ubuntu cosmic/main i386 libxml2-dev i386 2.9.4+dfsg1-7ubuntu1 [779 kB] Get:313 http://ftpmaster.internal/ubuntu cosmic/main i386 uuid-dev i386 2.32-0.1ubuntu1 [33.7 kB] Get:314 http://ftpmaster.internal/ubuntu cosmic/universe i386 libdap-dev i386 3.19.1-2build1 [789 kB] Get:315 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-dev i386 2.4.94-1 [255 kB] Get:316 http://ftpmaster.internal/ubuntu cosmic/universe i386 libepsilon1 i386 0.9.2+dfsg-4 [41.3 kB] Get:317 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-2.1-6 i386 2.1.8-stable-4build1 [146 kB] Get:318 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-core-2.1-6 i386 2.1.8-stable-4build1 [93.6 kB] Get:319 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-pthreads-2.1-6 i386 2.1.8-stable-4build1 [5408 B] Get:320 http://ftpmaster.internal/ubuntu cosmic/main i386 libexpat1-dev i386 2.2.6-1 [137 kB] Get:321 http://ftpmaster.internal/ubuntu cosmic/universe i386 libpsm-infinipath1 i386 3.3+20.604758e7-5 [182 kB] Get:322 http://ftpmaster.internal/ubuntu cosmic/main i386 librdmacm1 i386 19.0-1 [69.9 kB] Get:323 http://ftpmaster.internal/ubuntu cosmic/universe i386 libfabric1 i386 1.6.1-5 [364 kB] Get:324 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-double3 i386 3.3.8-2 [632 kB] Get:325 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-long3 i386 3.3.8-2 [319 kB] Get:326 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-quad3 i386 3.3.8-2 [1756 kB] Get:327 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-single3 i386 3.3.8-2 [645 kB] Get:328 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-bin i386 3.3.8-2 [34.7 kB] Get:329 http://ftpmaster.internal/ubuntu cosmic/main i386 libfftw3-dev i386 3.3.8-2 [3150 kB] Get:330 http://ftpmaster.internal/ubuntu cosmic/main i386 libpng-dev i386 1.6.34-2 [186 kB] Get:331 http://ftpmaster.internal/ubuntu cosmic/main i386 libfreetype6-dev i386 2.8.1-2ubuntu2 [2560 kB] Get:332 http://ftpmaster.internal/ubuntu cosmic/main i386 libfontconfig1-dev i386 2.13.0-5ubuntu3 [724 kB] Get:333 http://ftpmaster.internal/ubuntu cosmic/universe i386 libfyba0 i386 4.1.1-6 [124 kB] Get:334 http://ftpmaster.internal/ubuntu cosmic/universe i386 libfyba-dev i386 4.1.1-6 [180 kB] Get:335 http://ftpmaster.internal/ubuntu cosmic/universe i386 libfreexl1 i386 1.0.5-3 [34.4 kB] Get:336 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgeos-3.6.2 i386 3.6.2-1build2 [526 kB] Get:337 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgeos-c1v5 i386 3.6.2-1build2 [58.9 kB] Get:338 http://ftpmaster.internal/ubuntu cosmic/universe i386 proj-data all 5.1.0-2 [6952 kB] Get:339 http://ftpmaster.internal/ubuntu cosmic/universe i386 libproj13 i386 5.1.0-2 [202 kB] Get:340 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgeotiff2 i386 1.4.2-4 [54.4 kB] Get:341 http://ftpmaster.internal/ubuntu cosmic/main i386 libgif7 i386 5.1.4-3 [31.8 kB] Get:342 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhdf4-0-alt i386 4.2.13-4 [273 kB] Get:343 http://ftpmaster.internal/ubuntu cosmic/universe i386 libminizip1 i386 1.1-8build1 [23.6 kB] Get:344 http://ftpmaster.internal/ubuntu cosmic/universe i386 liburiparser1 i386 0.8.5-2 [40.9 kB] Get:345 http://ftpmaster.internal/ubuntu cosmic/universe i386 libkmlbase1 i386 1.3.0-7 [48.6 kB] Get:346 http://ftpmaster.internal/ubuntu cosmic/universe i386 libkmldom1 i386 1.3.0-7 [187 kB] Get:347 http://ftpmaster.internal/ubuntu cosmic/universe i386 libkmlengine1 i386 1.3.0-7 [79.0 kB] Get:348 http://ftpmaster.internal/ubuntu cosmic/universe i386 libnetcdf13 i386 1:4.6.1-3 [382 kB] Get:349 http://ftpmaster.internal/ubuntu cosmic/main i386 libltdl7 i386 2.4.6-4 [40.4 kB] Get:350 http://ftpmaster.internal/ubuntu cosmic/main i386 libodbc1 i386 2.3.6-0.1 [201 kB] Get:351 http://ftpmaster.internal/ubuntu cosmic/universe i386 libogdi3.2 i386 3.2.1+ds-4 [231 kB] Get:352 http://ftpmaster.internal/ubuntu cosmic/main i386 liblcms2-2 i386 2.9-3 [149 kB] Get:353 http://ftpmaster.internal/ubuntu cosmic/main i386 libnspr4 i386 2:4.18-1ubuntu1 [120 kB] Get:354 http://ftpmaster.internal/ubuntu cosmic/main i386 libnss3 i386 2:3.36.1-1ubuntu1 [1215 kB] Get:355 http://ftpmaster.internal/ubuntu cosmic/main i386 libpoppler79 i386 0.68.0-0ubuntu1 [847 kB] Get:356 http://ftpmaster.internal/ubuntu cosmic/main i386 libpq5 i386 10.5-1 [114 kB] Get:357 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqhull7 i386 2015.2-4 [162 kB] Get:358 http://ftpmaster.internal/ubuntu cosmic/universe i386 libspatialite7 i386 4.3.0a-5build2 [1256 kB] Get:359 http://ftpmaster.internal/ubuntu cosmic/universe i386 libxerces-c3.2 i386 3.2.1+debian-2 [914 kB] Get:360 http://ftpmaster.internal/ubuntu cosmic/main i386 odbcinst i386 2.3.6-0.1 [15.1 kB] Get:361 http://ftpmaster.internal/ubuntu cosmic/main i386 odbcinst1debian2 i386 2.3.6-0.1 [43.6 kB] Get:362 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgdal20 i386 2.3.1+dfsg-3build1 [6120 kB] Get:363 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgeos-dev i386 3.6.2-1build2 [76.4 kB] Get:364 http://ftpmaster.internal/ubuntu cosmic/main i386 libgif-dev i386 5.1.4-3 [21.9 kB] Get:365 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgl2ps1.4 i386 1.4.0+dfsg1-2 [38.5 kB] Get:366 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgl2ps-dev i386 1.4.0+dfsg1-2 [12.9 kB] Get:367 http://ftpmaster.internal/ubuntu cosmic/main i386 libgles1 i386 1.1.0-1 [12.1 kB] Get:368 http://ftpmaster.internal/ubuntu cosmic/main i386 libglu1-mesa i386 9.0.0-2.1build1 [178 kB] Get:369 http://ftpmaster.internal/ubuntu cosmic/main i386 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:370 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-dev all 2018.4-4 [251 kB] Get:371 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-core-dev all 2018.4-4 [2620 B] Get:372 http://ftpmaster.internal/ubuntu cosmic/main i386 libxau-dev i386 1:1.0.8-1 [10.2 kB] Get:373 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdmcp-dev i386 1:1.1.2-3 [24.9 kB] Get:374 http://ftpmaster.internal/ubuntu cosmic/main i386 xtrans-dev all 1.3.5-1 [70.5 kB] Get:375 http://ftpmaster.internal/ubuntu cosmic/main i386 libpthread-stubs0-dev i386 0.3-4 [4054 B] Get:376 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb1-dev i386 1.13-3 [85.4 kB] Get:377 http://ftpmaster.internal/ubuntu cosmic/main i386 libx11-dev i386 2:1.6.6-1 [671 kB] Get:378 http://ftpmaster.internal/ubuntu cosmic/main i386 mesa-common-dev i386 18.2.2-0ubuntu1 [551 kB] Get:379 http://ftpmaster.internal/ubuntu cosmic/main i386 libglvnd-core-dev i386 1.1.0-1 [12.6 kB] Get:380 http://ftpmaster.internal/ubuntu cosmic/main i386 libgles2 i386 1.1.0-1 [17.1 kB] Get:381 http://ftpmaster.internal/ubuntu cosmic/main i386 libopengl0 i386 1.1.0-1 [29.3 kB] Get:382 http://ftpmaster.internal/ubuntu cosmic/main i386 libglvnd-dev i386 1.1.0-1 [3392 B] Get:383 http://ftpmaster.internal/ubuntu cosmic/main i386 libx11-xcb-dev i386 2:1.6.6-1 [9760 B] Get:384 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri3-dev i386 1.13-3 [7664 B] Get:385 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-render0-dev i386 1.13-3 [19.2 kB] Get:386 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-randr0-dev i386 1.13-3 [21.7 kB] Get:387 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-shape0-dev i386 1.13-3 [7352 B] Get:388 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-xfixes0-dev i386 1.13-3 [12.1 kB] Get:389 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-sync-dev i386 1.13-3 [11.1 kB] Get:390 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-present-dev i386 1.13-3 [7172 B] Get:391 http://ftpmaster.internal/ubuntu cosmic/main i386 libxshmfence-dev i386 1.3-1 [3896 B] Get:392 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri2-0-dev i386 1.13-3 [8792 B] Get:393 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-glx0-dev i386 1.13-3 [29.3 kB] Get:394 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-fixes-dev all 1:2018.4-4 [2620 B] Get:395 http://ftpmaster.internal/ubuntu cosmic/main i386 libxfixes-dev i386 1:5.0.3-1 [11.2 kB] Get:396 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-damage-dev all 1:2018.4-4 [2620 B] Get:397 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdamage-dev i386 1:1.1.4-3 [5174 B] Get:398 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-xext-dev all 2018.4-4 [2620 B] Get:399 http://ftpmaster.internal/ubuntu cosmic/main i386 libxext-dev i386 2:1.3.3-1 [82.8 kB] Get:400 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-xf86vidmode-dev all 2018.4-4 [2632 B] Get:401 http://ftpmaster.internal/ubuntu cosmic/main i386 libxxf86vm-dev i386 1:1.1.4-1 [13.9 kB] Get:402 http://ftpmaster.internal/ubuntu cosmic/main i386 libgl1-mesa-dev i386 18.2.2-0ubuntu1 [4412 B] Get:403 http://ftpmaster.internal/ubuntu cosmic/main i386 libglu1-mesa-dev i386 9.0.0-2.1build1 [204 kB] Get:404 http://ftpmaster.internal/ubuntu cosmic/main i386 libice-dev i386 2:1.0.9-2 [46.8 kB] Get:405 http://ftpmaster.internal/ubuntu cosmic/main i386 libjs-jquery all 3.2.1-1 [152 kB] Get:406 http://ftpmaster.internal/ubuntu cosmic/main i386 libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:407 http://ftpmaster.internal/ubuntu cosmic/main i386 libjs-sphinxdoc all 1.7.9-1 [92.3 kB] Get:408 http://ftpmaster.internal/ubuntu cosmic/universe i386 libkmlconvenience1 i386 1.3.0-7 [48.2 kB] Get:409 http://ftpmaster.internal/ubuntu cosmic/universe i386 libkmlregionator1 i386 1.3.0-7 [20.8 kB] Get:410 http://ftpmaster.internal/ubuntu cosmic/universe i386 libkmlxsd1 i386 1.3.0-7 [30.9 kB] Get:411 http://ftpmaster.internal/ubuntu cosmic/main i386 libltdl-dev i386 2.4.6-4 [164 kB] Get:412 http://ftpmaster.internal/ubuntu cosmic/universe i386 libminizip-dev i386 1.1-8build1 [30.3 kB] Get:413 http://ftpmaster.internal/ubuntu cosmic/universe i386 libnetcdf-c++4 i386 4.2-11 [36.0 kB] Get:414 http://ftpmaster.internal/ubuntu cosmic/universe i386 libnetcdf-dev i386 1:4.6.1-3 [37.6 kB] Get:415 http://ftpmaster.internal/ubuntu cosmic/universe i386 libnetcdf-cxx-legacy-dev i386 4.2-11 [55.3 kB] Get:416 http://ftpmaster.internal/ubuntu cosmic/main i386 libogg-dev i386 1.3.2-1 [155 kB] Get:417 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc5 i386 1.11.10-3 [115 kB] Get:418 http://ftpmaster.internal/ubuntu cosmic/main i386 ocl-icd-libopencl1 i386 2.2.11-1ubuntu1 [31.3 kB] Get:419 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc-plugins i386 1.11.10-3 [13.2 kB] Get:420 http://ftpmaster.internal/ubuntu cosmic/universe i386 libpmix2 i386 3.0.1-2 [435 kB] Get:421 http://ftpmaster.internal/ubuntu cosmic/universe i386 libopenmpi3 i386 3.1.2-6 [2530 kB] Get:422 http://ftpmaster.internal/ubuntu cosmic/main i386 libpoppler-dev i386 0.68.0-0ubuntu1 [4604 B] Get:423 http://ftpmaster.internal/ubuntu cosmic/main i386 libpoppler-private-dev i386 0.68.0-0ubuntu1 [172 kB] Get:424 http://ftpmaster.internal/ubuntu cosmic/main i386 libpq-dev i386 10.5-1 [164 kB] Get:425 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2.7 i386 2.7.15-4ubuntu4 [1056 kB] Get:426 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2.7-dev i386 2.7.15-4ubuntu4 [31.3 MB] Get:427 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2-dev i386 2.7.15-3 [7800 B] Get:428 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython-dev i386 2.7.15-3 [5896 B] Get:429 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqhull-r7 i386 2015.2-4 [160 kB] Get:430 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqhull-dev i386 2015.2-4 [381 kB] Get:431 http://ftpmaster.internal/ubuntu cosmic/main i386 libqt5opengl5 i386 5.11.1+dfsg-7ubuntu1 [146 kB] Get:432 http://ftpmaster.internal/ubuntu cosmic/main i386 libsm-dev i386 2:1.2.2-1 [15.1 kB] Get:433 http://ftpmaster.internal/ubuntu cosmic/main i386 libsodium23 i386 1.0.16-2build1 [165 kB] Get:434 http://ftpmaster.internal/ubuntu cosmic/main i386 libsqlite3-dev i386 3.24.0-1 [680 kB] Get:435 http://ftpmaster.internal/ubuntu cosmic/universe i386 libswscale5 i386 7:4.0.2-2 [157 kB] Get:436 http://ftpmaster.internal/ubuntu cosmic/universe i386 libswscale-dev i386 7:4.0.2-2 [180 kB] Get:437 http://ftpmaster.internal/ubuntu cosmic/universe i386 libsymspg1 i386 1.10.4-3 [67.7 kB] Get:438 http://ftpmaster.internal/ubuntu cosmic/universe i386 libsymspg-dev i386 1.10.4-3 [75.6 kB] Get:439 http://ftpmaster.internal/ubuntu cosmic/main i386 libtcl8.6 i386 8.6.8+dfsg-4 [934 kB] Get:440 http://ftpmaster.internal/ubuntu cosmic/main i386 libtheora-dev i386 1.1.1+dfsg.1-14 [177 kB] Get:441 http://ftpmaster.internal/ubuntu cosmic/main i386 libjbig-dev i386 2.1-3.1build1 [25.4 kB] Get:442 http://ftpmaster.internal/ubuntu cosmic/main i386 liblzma-dev i386 5.2.2-1.3 [154 kB] Get:443 http://ftpmaster.internal/ubuntu cosmic/main i386 libtiffxx5 i386 4.0.9-6 [6356 B] Get:444 http://ftpmaster.internal/ubuntu cosmic/main i386 libtiff5-dev i386 4.0.9-6 [292 kB] Get:445 http://ftpmaster.internal/ubuntu cosmic/main i386 libtiff-dev i386 4.0.9-6 [2252 B] Get:446 http://ftpmaster.internal/ubuntu cosmic/main i386 libxft2 i386 2.3.2-2 [39.6 kB] Get:447 http://ftpmaster.internal/ubuntu cosmic/main i386 libxss1 i386 1:1.2.3-1 [8408 B] Get:448 http://ftpmaster.internal/ubuntu cosmic/main i386 libtk8.6 i386 8.6.8-4 [730 kB] Get:449 http://ftpmaster.internal/ubuntu cosmic/universe i386 liburiparser-dev i386 0.8.5-2 [10.2 kB] Get:450 http://ftpmaster.internal/ubuntu cosmic/universe i386 libvoro++1 i386 0.4.6+dfsg1-2 [108 kB] Get:451 http://ftpmaster.internal/ubuntu cosmic/universe i386 libeigen3-dev all 3.3.4-4build1 [810 kB] Get:452 http://ftpmaster.internal/ubuntu cosmic/universe i386 libepsilon-dev i386 0.9.2+dfsg-4 [50.7 kB] Get:453 http://ftpmaster.internal/ubuntu cosmic/universe i386 libfreexl-dev i386 1.0.5-3 [32.2 kB] Get:454 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgeotiff-dev i386 1.4.2-4 [80.9 kB] Get:455 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhdf4-alt-dev i386 4.2.13-4 [381 kB] Get:456 http://ftpmaster.internal/ubuntu cosmic/main i386 libjson-c-dev i386 0.12.1-1.3 [34.1 kB] Get:457 http://ftpmaster.internal/ubuntu cosmic/universe i386 libkml-dev i386 1.3.0-7 [933 kB] Get:458 http://ftpmaster.internal/ubuntu cosmic/universe i386 libproj-dev i386 5.1.0-2 [252 kB] Get:459 http://ftpmaster.internal/ubuntu cosmic/universe i386 libogdi3.2-dev i386 3.2.1+ds-4 [23.7 kB] Get:460 http://ftpmaster.internal/ubuntu cosmic/universe i386 libopenjp2-7-dev i386 2.3.0-1 [26.6 kB] Get:461 http://ftpmaster.internal/ubuntu cosmic/universe i386 libspatialite-dev i386 4.3.0a-5build2 [1435 kB] Get:462 http://ftpmaster.internal/ubuntu cosmic/main i386 libwebpdemux2 i386 0.6.1-2 [9824 B] Get:463 http://ftpmaster.internal/ubuntu cosmic/main i386 libwebp-dev i386 0.6.1-2 [285 kB] Get:464 http://ftpmaster.internal/ubuntu cosmic/universe i386 libxerces-c-dev i386 3.2.1+debian-2 [1729 kB] Get:465 http://ftpmaster.internal/ubuntu cosmic/main i386 libzstd-dev i386 1.3.5+dfsg-1ubuntu1 [268 kB] Get:466 http://ftpmaster.internal/ubuntu cosmic/main i386 unixodbc-dev i386 2.3.6-0.1 [242 kB] Get:467 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgdal-dev i386 2.3.1+dfsg-3build1 [8072 kB] Get:468 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhdf5-openmpi-100 i386 1.10.0-patch1+docs-4build2 [1255 kB] Get:469 http://ftpmaster.internal/ubuntu cosmic/universe i386 openmpi-common all 3.1.2-6 [146 kB] Get:470 http://ftpmaster.internal/ubuntu cosmic/main i386 libibverbs-dev i386 19.0-1 [120 kB] Get:471 http://ftpmaster.internal/ubuntu cosmic/main i386 libnuma-dev i386 2.0.11-2.2 [34.4 kB] Get:472 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc-dev i386 1.11.10-3 [179 kB] Get:473 http://ftpmaster.internal/ubuntu cosmic/universe i386 openmpi-bin i386 3.1.2-6 [86.2 kB] Get:474 http://ftpmaster.internal/ubuntu cosmic/universe i386 libopenmpi-dev i386 3.1.2-6 [843 kB] Get:475 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhdf5-openmpi-dev i386 1.10.0-patch1+docs-4build2 [2515 kB] Get:476 http://ftpmaster.internal/ubuntu cosmic/universe i386 mpi-default-dev i386 1.13 [3748 B] Get:477 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhdf5-mpi-dev i386 1.10.0-patch1+docs-4build2 [3172 B] Get:478 http://ftpmaster.internal/ubuntu cosmic/main i386 libjsoncpp-dev i386 1.7.4-3 [85.6 kB] Get:479 http://ftpmaster.internal/ubuntu cosmic/main i386 libxt6 i386 1:1.1.5-1 [164 kB] Get:480 http://ftpmaster.internal/ubuntu cosmic/universe i386 libvtk6.3 i386 6.3.0+dfsg2-2build4 [33.5 MB] Get:481 http://ftpmaster.internal/ubuntu cosmic/universe i386 libvtk6.3-qt i386 6.3.0+dfsg2-2build4 [263 kB] Get:482 http://ftpmaster.internal/ubuntu cosmic/universe i386 libvtk6-jni i386 6.3.0+dfsg2-2build4 [4533 kB] Get:483 http://ftpmaster.internal/ubuntu cosmic/universe i386 libvtk6-java i386 6.3.0+dfsg2-2build4 [3321 kB] Get:484 http://ftpmaster.internal/ubuntu cosmic/main i386 libxrender-dev i386 1:0.9.10-1 [25.1 kB] Get:485 http://ftpmaster.internal/ubuntu cosmic/main i386 libxft-dev i386 2.3.2-2 [50.3 kB] Get:486 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-scrnsaver-dev all 2018.4-4 [2628 B] Get:487 http://ftpmaster.internal/ubuntu cosmic/main i386 libxss-dev i386 1:1.2.3-1 [12.2 kB] Get:488 http://ftpmaster.internal/ubuntu cosmic/main i386 libxt-dev i386 1:1.1.5-1 [393 kB] Get:489 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-cbor i386 1.0.0-1build1 [22.5 kB] Get:490 http://ftpmaster.internal/ubuntu cosmic/main i386 python-concurrent.futures all 3.2.0-1 [34.2 kB] Get:491 http://ftpmaster.internal/ubuntu cosmic/main i386 python-configparser all 3.5.0b2-1 [59.3 kB] Get:492 http://ftpmaster.internal/ubuntu cosmic/main i386 python-future all 0.15.2-5 [335 kB] Get:493 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-lz4 i386 1.1.0+dfsg-1 [25.3 kB] Get:494 http://ftpmaster.internal/ubuntu cosmic/main i386 python-cffi-backend i386 1.11.5-3ubuntu1 [68.0 kB] Get:495 http://ftpmaster.internal/ubuntu cosmic/main i386 python-six all 1.11.0-2 [11.3 kB] Get:496 http://ftpmaster.internal/ubuntu cosmic/main i386 python-nacl i386 1.2.1-3build1 [35.5 kB] Get:497 http://ftpmaster.internal/ubuntu cosmic/main i386 python-asn1crypto all 0.24.0-1 [72.7 kB] Get:498 http://ftpmaster.internal/ubuntu cosmic/main i386 python-enum34 all 1.1.6-2 [34.8 kB] Get:499 http://ftpmaster.internal/ubuntu cosmic/main i386 python-idna all 2.6-1 [32.4 kB] Get:500 http://ftpmaster.internal/ubuntu cosmic/main i386 python-ipaddress all 1.0.17-1 [18.2 kB] Get:501 http://ftpmaster.internal/ubuntu cosmic/main i386 python-cryptography i386 2.3-1ubuntu1 [185 kB] Get:502 http://ftpmaster.internal/ubuntu cosmic/main i386 python-openssl all 18.0.0-1 [42.9 kB] Get:503 http://ftpmaster.internal/ubuntu cosmic/main i386 python-pil i386 5.2.0-2 [336 kB] Get:504 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-qrcode all 6.0-1 [28.0 kB] Get:505 http://ftpmaster.internal/ubuntu cosmic/main i386 python-attr all 17.4.0-2 [23.7 kB] Get:506 http://ftpmaster.internal/ubuntu cosmic/main i386 python-pyasn1 all 0.4.2-3 [46.7 kB] Get:507 http://ftpmaster.internal/ubuntu cosmic/main i386 python-pyasn1-modules all 0.2.1-0.2 [32.8 kB] Get:508 http://ftpmaster.internal/ubuntu cosmic/main i386 python-service-identity all 16.0.0-2 [9318 B] Get:509 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-snappy i386 0.5.3-1 [16.4 kB] Get:510 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-trie all 0.2+ds-1 [7076 B] Get:511 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-trollius all 2.1~b1-5 [83.9 kB] Get:512 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 python-twisted-bin i386 18.7.0-3 [14.6 kB] Get:513 http://ftpmaster.internal/ubuntu cosmic/main i386 python-pkg-resources all 40.2.0-1 [128 kB] Get:514 http://ftpmaster.internal/ubuntu cosmic/main i386 python-zope.interface i386 4.3.2-1build3 [82.6 kB] Get:515 http://ftpmaster.internal/ubuntu cosmic/main i386 python-automat all 0.6.0-1 [25.1 kB] Get:516 http://ftpmaster.internal/ubuntu cosmic/main i386 python-constantly all 15.1.0-1 [7960 B] Get:517 http://ftpmaster.internal/ubuntu cosmic/main i386 python-hyperlink all 17.3.1-2 [27.5 kB] Get:518 http://ftpmaster.internal/ubuntu cosmic/main i386 python-incremental all 16.10.1-3 [14.4 kB] Get:519 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 python-twisted-core all 18.7.0-3 [1985 kB] Get:520 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 python-twisted all 18.7.0-3 [3720 B] Get:521 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-txaio all 2.8.1-1 [18.2 kB] Get:522 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-u-msgpack all 2.1-1 [7268 B] Get:523 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-ubjson i386 0.12.0-1 [31.8 kB] Get:524 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-wsaccel i386 0.6.2-1build1 [39.0 kB] Get:525 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-autobahn all 17.10.1+dfsg1-3 [157 kB] Get:526 http://ftpmaster.internal/ubuntu cosmic/universe i386 mpi-default-bin i386 1.13 [2968 B] Get:527 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-mpi4py i386 2.0.0-3build2 [342 kB] Get:528 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-vtk6 i386 6.3.0+dfsg2-2build4 [289 kB] Get:529 http://ftpmaster.internal/ubuntu cosmic/main i386 tcl8.6 i386 8.6.8+dfsg-4 [14.5 kB] Get:530 http://ftpmaster.internal/ubuntu cosmic/main i386 tcl8.6-dev i386 8.6.8+dfsg-4 [964 kB] Get:531 http://ftpmaster.internal/ubuntu cosmic/universe i386 tcl i386 8.6.0+9 [5154 B] Get:532 http://ftpmaster.internal/ubuntu cosmic/universe i386 tcl-dev i386 8.6.0+9 [5658 B] Get:533 http://ftpmaster.internal/ubuntu cosmic/universe i386 tcl-vtk6 i386 6.3.0+dfsg2-2build4 [146 kB] Get:534 http://ftpmaster.internal/ubuntu cosmic/main i386 tk8.6 i386 8.6.8-4 [12.4 kB] Get:535 http://ftpmaster.internal/ubuntu cosmic/main i386 tk8.6-dev i386 8.6.8-4 [752 kB] Get:536 http://ftpmaster.internal/ubuntu cosmic/universe i386 tk i386 8.6.0+9 [3176 B] Get:537 http://ftpmaster.internal/ubuntu cosmic/universe i386 tk-dev i386 8.6.0+9 [2964 B] Get:538 http://ftpmaster.internal/ubuntu cosmic/universe i386 vtk6 i386 6.3.0+dfsg2-2build4 [190 kB] Get:539 http://ftpmaster.internal/ubuntu cosmic/universe i386 libvtk6-dev i386 6.3.0+dfsg2-2build4 [2143 kB] Get:540 http://ftpmaster.internal/ubuntu cosmic/universe i386 voro++-dev i386 0.4.6+dfsg1-2 [136 kB] Get:541 http://ftpmaster.internal/ubuntu cosmic/main i386 opencl-c-headers all 2.2~2018.05.14-gde26592-1 [30.0 kB] Get:542 http://ftpmaster.internal/ubuntu cosmic/main i386 ocl-icd-opencl-dev i386 2.2.11-1ubuntu1 [2508 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 312 MB in 15s (21.0 MB/s) Selecting previously unselected package libpython3.6-minimal:i386. (Reading database ... 13729 files and directories currently installed.) Preparing to unpack .../libpython3.6-minimal_3.6.7~rc1-1_i386.deb ... Unpacking libpython3.6-minimal:i386 (3.6.7~rc1-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.2.6-1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-1) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../python3.6-minimal_3.6.7~rc1-1_i386.deb ... Unpacking python3.6-minimal (3.6.7~rc1-1) ... Setting up libpython3.6-minimal:i386 (3.6.7~rc1-1) ... Setting up libexpat1:i386 (2.2.6-1) ... Setting up python3.6-minimal (3.6.7~rc1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13976 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.6.6-1_i386.deb ... Unpacking python3-minimal (3.6.6-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libmpdec2:i386. Preparing to unpack .../2-libmpdec2_2.4.2-2_i386.deb ... Unpacking libmpdec2:i386 (2.4.2-2) ... Selecting previously unselected package libpython3.6-stdlib:i386. Preparing to unpack .../3-libpython3.6-stdlib_3.6.7~rc1-1_i386.deb ... Unpacking libpython3.6-stdlib:i386 (3.6.7~rc1-1) ... Selecting previously unselected package python3.6. Preparing to unpack .../4-python3.6_3.6.7~rc1-1_i386.deb ... Unpacking python3.6 (3.6.7~rc1-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../5-libpython3-stdlib_3.6.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.6.6-1) ... Setting up python3-minimal (3.6.6-1) ... Selecting previously unselected package python3. (Reading database ... 14406 files and directories currently installed.) Preparing to unpack .../000-python3_3.6.6-1_i386.deb ... Unpacking python3 (3.6.6-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../001-libxau6_1%3a1.0.8-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../002-libbsd0_0.9.1-1_i386.deb ... Unpacking libbsd0:i386 (0.9.1-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../003-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../004-libxcb1_1.13-3_i386.deb ... Unpacking libxcb1:i386 (1.13-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../005-libx11-data_2%3a1.6.6-1_all.deb ... Unpacking libx11-data (2:1.6.6-1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../006-libx11-6_2%3a1.6.6-1_i386.deb ... Unpacking libx11-6:i386 (2:1.6.6-1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../007-libxext6_2%3a1.3.3-1_i386.deb ... Unpacking libxext6:i386 (2:1.3.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../008-bsdmainutils_11.1.2ubuntu2_i386.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.3-10_i386.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../010-libpipeline1_1.5.0-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.8.4-2_i386.deb ... Unpacking man-db (2.8.4-2) ... Selecting previously unselected package libogg0:i386. Preparing to unpack .../012-libogg0_1.3.2-1_i386.deb ... Unpacking libogg0:i386 (1.3.2-1) ... Selecting previously unselected package libglib2.0-0:i386. 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Setting up libmagic-mgc (1:5.34-2) ... Setting up libfyba0:i386 (4.1.1-6) ... Setting up libmagic1:i386 (1:5.34-2) ... Setting up libdrm-common (2.4.94-1) ... Setting up libgraphite2-3:i386 (1.3.12-1) ... Setting up librhash0:i386 (1.3.6-2) ... Setting up libjbig-dev:i386 (2.1-3.1build1) ... Setting up libcroco3:i386 (0.6.12-2) ... Setting up libx265-160:i386 (2.8-4) ... Setting up libxslt1.1:i386 (1.1.32-2) ... Setting up libsymspg1 (1.10.4-3) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libogg0:i386 (1.3.2-1) ... Setting up gdal-data (2.3.1+dfsg-3build1) ... Setting up libfftw3-quad3:i386 (3.3.8-2) ... Setting up libvoro++1 (0.4.6+dfsg1-2) ... Setting up libsodium23:i386 (1.0.16-2build1) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libhyphen0:i386 (2.8.8-5) ... Setting up libgeos-c1v5:i386 (3.6.2-1build2) ... Setting up libx11-xcb1:i386 (2:1.6.6-1) ... Setting up voro++-dev (0.4.6+dfsg1-2) ... Setting up libpixman-1-0:i386 (0.34.0-2) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libmp3lame0:i386 (3.100-2build1) ... Setting up libblas3:i386 (3.8.0-1build1) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up gir1.2-glib-2.0:i386 (1.58.0-1) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libjpeg-turbo8-dev:i386 (2.0.0-0ubuntu2) ... Setting up libglib2.0-data (2.58.1-2) ... Setting up libcrystalhd3:i386 (1:0.0~git20110715.fdd2f19-13) ... Setting up libevent-pthreads-2.1-6:i386 (2.1.8-stable-4build1) ... Setting up openmpi-common (3.1.2-6) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libcodec2-0.8.1:i386 (0.8.1-1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libboost1.67-dev:i386 (1.67.0-7) ... Setting up libheimbase1-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libsnappy1v5:i386 (1.1.7-1) ... Setting up libcharls-dev:i386 (1.1.0+dfsg-2) ... Setting up libzstd-dev:i386 (1.3.5+dfsg-1ubuntu1) ... Processing triggers for systemd (239-7ubuntu9) ... Setting up libltdl7:i386 (2.4.6-4) ... Setting up libmtdev1:i386 (1.1.5-1ubuntu3) ... Setting up libjson-c-dev:i386 (0.12.1-1.3) ... Setting up libzvbi-common (0.2.35-13) ... Setting up libfribidi0:i386 (1.0.5-3) ... Setting up libexpat1-dev:i386 (2.2.6-1) ... Setting up libpciaccess0:i386 (0.14-1) ... Setting up libfftw3-single3:i386 (3.3.8-2) ... Setting up libsensors4:i386 (1:3.4.0-4) ... Setting up libgles2:i386 (1.1.0-1) ... Setting up shared-mime-info (1.10-1) ... Setting up x11proto-scrnsaver-dev (2018.4-4) ... Setting up libxkbcommon0:i386 (0.8.2-1) ... Setting up libpcrecpp0v5:i386 (2:8.39-11) ... Setting up libpcre32-3:i386 (2:8.39-11) ... Setting up libgudev-1.0-0:i386 (1:232-2) ... Setting up libvpx5:i386 (1.7.0-3) ... Setting up libmysqlclient20:i386 (5.7.23-2ubuntu1) ... Setting up icu-devtools (60.2-6ubuntu1) ... Setting up liborc-0.4-0:i386 (1:0.4.28-3) ... Setting up libpcre16-3:i386 (2:8.39-11) ... Setting up libaom0:i386 (1.0.0-2) ... Setting up libboost-dev:i386 (1.67.0.0ubuntu1) ... Setting up libgme0:i386 (0.6.2-1) ... Setting up libtcl8.6:i386 (8.6.8+dfsg-4) ... Setting up libthai-data (0.1.28-1) ... Setting up liblzma-dev:i386 (5.2.2-1.3) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libnuma-dev:i386 (2.0.11-2.2) ... Setting up ocl-icd-libopencl1:i386 (2.2.11-1ubuntu1) ... Setting up libzvbi0:i386 (0.2.35-13) ... Setting up libkeyutils1:i386 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:i386 (3.4.0-1) ... Setting up libvorbis0a:i386 (1.3.6-1) ... Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmpg123-0:i386 (1.25.10-2) ... Setting up libfftw3-long3:i386 (3.3.8-2) ... Setting up libglib2.0-bin (2.58.1-2) ... Setting up libfyba-dev:i386 (4.1.1-6) ... Setting up libogg-dev:i386 (1.3.2-1) ... Setting up libgfortran5:i386 (8.2.0-7ubuntu1) ... Setting up libglvnd-core-dev:i386 (1.1.0-1) ... Setting up libgraphite2-dev:i386 (1.3.12-1) ... Setting up hdf5-helpers (1.10.0-patch1+docs-4build2) ... Setting up libqhull-r7:i386 (2015.2-4) ... Setting up libgsm1:i386 (1.0.13-4build1) ... Setting up libx11-data (2:1.6.6-1) ... Setting up libpython2.7-stdlib:i386 (2.7.15-4ubuntu4) ... Setting up libxau6:i386 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-8) ... Setting up libmpdec2:i386 (2.4.2-2) ... Setting up libdbus-1-3:i386 (1.12.10-1ubuntu2) ... Setting up liblzo2-2:i386 (2.10-0.1) ... Setting up liburiparser1:i386 (0.8.5-2) ... Setting up libavahi-common-data:i386 (0.7-4ubuntu2) ... Setting up libsz2:i386 (1.0.2-1) ... Setting up proj-data (5.1.0-2) ... Setting up libwayland-server0:i386 (1.16.0-1ubuntu1) ... Setting up libwebp6:i386 (0.6.1-2) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libjsoncpp1:i386 (1.7.4-3) ... Setting up libfreexl-dev:i386 (1.0.5-3) ... Setting up libvorbisfile3:i386 (1.3.6-1) ... Setting up libjsoncpp-dev:i386 (1.7.4-3) ... Setting up libqt5core5a:i386 (5.11.1+dfsg-7ubuntu1) ... Setting up libpython3.6-stdlib:i386 (3.6.7~rc1-1) ... Setting up libsymspg-dev (1.10.4-3) ... Setting up libk5crypto3:i386 (1.16-2ubuntu1) ... Setting up libqt5dbus5:i386 (5.11.1+dfsg-7ubuntu1) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libpcre3-dev:i386 (2:8.39-11) ... Setting up libdap25:i386 (3.19.1-2build1) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up python3.6 (3.6.7~rc1-1) ... Setting up libodbc1:i386 (2.3.6-0.1) ... Setting up libgstreamer1.0-0:i386 (1.14.2-2) ... Setcap worked! gst-ptp-helper is not suid! Setting up libqt5network5:i386 (5.11.1+dfsg-7ubuntu1) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libwacom2:i386 (0.30-1) ... Setting up libhdf5-100:i386 (1.10.0-patch1+docs-4build2) ... Setting up libmysqlclient-dev (5.7.23-2ubuntu1) ... Setting up libwind0-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libxshmfence-dev:i386 (1.3-1) ... Setting up gettext (0.19.8.1-8) ... Setting up libblas-dev:i386 (3.8.0-1build1) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libopenmpt0:i386 (0.3.11-1) ... Setting up libarchive13:i386 (3.2.2-5) ... Setting up libeigen3-dev (3.3.4-4build1) ... Setting up libgif-dev (5.1.4-3) ... Setting up libepsilon-dev:i386 (0.9.2+dfsg-4) ... Setting up libasn1-8-heimdal:i386 (7.5.0+dfsg-2) ... Setting up ocl-icd-opencl-dev:i386 (2.2.11-1ubuntu1) ... Setting up liblapack3:i386 (3.8.0-1build1) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libhcrypto4-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libaec-dev:i386 (1.0.2-1) ... Setting up python2.7 (2.7.15-4ubuntu4) ... Setting up libnss3:i386 (2:3.36.1-1ubuntu1) ... Setting up libproj13:i386 (5.1.0-2) ... Setting up libgeos-dev (3.6.2-1build2) ... Setting up libharfbuzz0b:i386 (1.8.8-2) ... Setting up libtiff5:i386 (4.0.9-6) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libxau-dev:i386 (1:1.0.8-1) ... Setting up libnl-route-3-200:i386 (3.4.0-1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:i386 (0.1.28-1) ... Setting up file (1:5.34-2) ... Setting up libinput-bin (1.12.1-1) ... Setting up libsuperlu5:i386 (5.2.1+dfsg1-3build1) ... Setting up libhwloc5:i386 (1.11.10-3) ... Setting up libkmlbase1:i386 (1.3.0-7) ... Setting up libhx509-5-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libqhull-dev:i386 (2015.2-4) ... Setting up libdrm2:i386 (2.4.94-1) ... Setting up libogdi3.2 (3.2.1+ds-4) ... Setting up libhwloc-plugins:i386 (1.11.10-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libkmlxsd1:i386 (1.3.0-7) ... Setting up libdrm-intel1:i386 (2.4.94-1) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3) ... Setting up libjpeg8-dev:i386 (8c-2ubuntu8) ... Setting up libsuperlu-dev:i386 (5.2.1+dfsg1-3build1) ... Setting up gir1.2-harfbuzz-0.0:i386 (1.8.8-2) ... Setting up libjpeg-dev:i386 (8c-2ubuntu8) ... Setting up libdapserver7v5:i386 (3.19.1-2build1) ... Setting up libqt5positioning5:i386 (5.11.1+dfsg-4) ... Setting up libwebpmux3:i386 (0.6.1-2) ... Setting up libva-drm2:i386 (2.2.0-1) ... Setting up tcl8.6 (8.6.8+dfsg-4) ... Setting up libpython2.7:i386 (2.7.15-4ubuntu4) ... Setting up libgeotiff2:i386 (1.4.2-4) ... Setting up libfftw3-dev:i386 (3.3.8-2) ... Setting up automake (1:1.16.1-1.1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:i386 (2:1.0.9-2) ... Setting up libtiffxx5:i386 (4.0.9-6) ... Setting up libwebpdemux2:i386 (0.6.1-2) ... Setting up libspatialite7:i386 (4.3.0a-5build2) ... Setting up libarpack2:i386 (3.6.2-1) ... Setting up man-db (2.8.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:i386 (2.7.15-3) ... Setting up liburiparser-dev (0.8.5-2) ... Setting up libkrb5-3:i386 (1.16-2ubuntu1) ... Setting up libpython2.7-dev:i386 (2.7.15-4ubuntu4) ... Setting up libkmldom1:i386 (1.3.0-7) ... Setting up libavahi-common3:i386 (0.7-4ubuntu2) ... Setting up libdrm-radeon1:i386 (2.4.94-1) ... Setting up default-libmysqlclient-dev:i386 (1.0.4) ... Setting up libkrb5-26-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libpng-dev:i386 (1.6.34-2) ... Setting up libhdf4-0-alt (4.2.13-4) ... Setting up libvorbisenc2:i386 (1.3.6-1) ... Setting up libdrm-nouveau2:i386 (2.4.94-1) ... Setting up libgfortran-8-dev:i386 (8.2.0-7ubuntu1) ... Setting up libspatialite-dev:i386 (4.3.0a-5build2) ... Setting up libxcb1:i386 (1.13-3) ... Setting up libharfbuzz-gobject0:i386 (1.8.8-2) ... Setting up libheimntlm0-heimdal:i386 (7.5.0+dfsg-2) ... Setting up tcl8.6-dev:i386 (8.6.8+dfsg-4) ... Setting up libxcb-xkb1:i386 (1.13-3) ... Setting up libqt5qml5:i386 (5.11.1-6) ... Setting up liblapack-dev:i386 (3.8.0-1build1) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libtool (2.4.6-4) ... Setting up libxcb-xinerama0:i386 (1.13-3) ... Setting up libpython3-stdlib:i386 (3.6.6-1) ... Setting up libibverbs1:i386 (19.0-1) ... Setting up libxcb-present0:i386 (1.13-3) ... Setting up libgstreamer-plugins-base1.0-0:i386 (1.14.2-1ubuntu1) ... Setting up libfontconfig1:i386 (2.13.0-5ubuntu3) ... Setting up libxcb-dri2-0:i386 (1.13-3) ... Setting up libsm6:i386 (2:1.2.2-1) ... Setting up libqt5sensors5:i386 (5.11.1-3) ... Setting up libproj-dev:i386 (5.1.0-2) ... Setting up libxcb-dri3-0:i386 (1.13-3) ... Setting up libxcb-glx0:i386 (1.13-3) ... Setting up libxcb-randr0:i386 (1.13-3) ... Setting up libhdf5-cpp-100:i386 (1.10.0-patch1+docs-4build2) ... Setting up libxcb-xfixes0:i386 (1.13-3) ... Setting up libxcb-icccm4:i386 (0.4.1-1ubuntu1) ... Setting up libxcb-render0:i386 (1.13-3) ... Setting up libharfbuzz-icu0:i386 (1.8.8-2) ... Setting up libltdl-dev:i386 (2.4.6-4) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.6-1) ... Setting up libdrm-amdgpu1:i386 (2.4.94-1) ... Setting up libhwloc-dev:i386 (1.11.10-3) ... Setting up libarmadillo9 (1:9.100.5+dfsg-1) ... Setting up gfortran-8 (8.2.0-7ubuntu1) ... Setting up libdrm-dev:i386 (2.4.94-1) ... Setting up libicu-le-hb0:i386 (1.0.3+git161113-5) ... Setting up libgbm1:i386 (18.2.2-0ubuntu1) ... Setting up libtiff5-dev:i386 (4.0.9-6) ... Setting up libx11-6:i386 (2:1.6.6-1) ... Setting up libinput10:i386 (1.12.1-1) ... Setting up libgl1-mesa-dri:i386 (18.2.2-0ubuntu1) ... Setting up tcl (8.6.0+9) ... Setting up libbluray2:i386 (1:1.0.2-3) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4build2) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libxcb-util1:i386 (0.4.0-0ubuntu3) ... Setting up libpmix2:i386 (3.0.1-2) ... Setting up librdmacm1:i386 (19.0-1) ... Setting up libxkbcommon-x11-0:i386 (0.8.2-1) ... Setting up python2 (2.7.15-3) ... Setting up libogdi3.2-dev (3.2.1+ds-4) ... Setting up libwebp-dev:i386 (0.6.1-2) ... Setting up libxcb-sync1:i386 (1.13-3) ... Setting up libgssapi-krb5-2:i386 (1.16-2ubuntu1) ... Setting up libpython2-dev:i386 (2.7.15-3) ... Setting up libpython-stdlib:i386 (2.7.15-3) ... Setting up libpoppler79:i386 (0.68.0-0ubuntu1) ... Setting up libkmlengine1:i386 (1.3.0-7) ... Setting up libfreetype6-dev:i386 (2.8.1-2ubuntu2) ... Setting up libice-dev:i386 (2:1.0.9-2) ... Setting up ibverbs-providers:i386 (19.0-1) ... Setting up libiculx60:i386 (60.2-6ubuntu1) ... Setting up libarpack2-dev:i386 (3.6.2-1) ... Setting up libxcb-shm0:i386 (1.13-3) ... Setting up libxt6:i386 (1:1.1.5-1) ... Setting up libxcb-shape0:i386 (1.13-3) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libxcb1-dev:i386 (1.13-3) ... Setting up libxcb-glx0-dev:i386 (1.13-3) ... Setting up libavahi-client3:i386 (0.7-4ubuntu2) ... Setting up libxcb-keysyms1:i386 (0.4.0-1) ... Setting up libegl-mesa0:i386 (18.2.2-0ubuntu1) ... Setting up libx11-dev:i386 (2:1.6.6-1) ... Setting up libqt5webchannel5:i386 (5.11.1-3) ... Setting up libxft2:i386 (2.3.2-2) ... Setting up libgssapi3-heimdal:i386 (7.5.0+dfsg-2) ... Setting up python3-lib2to3 (3.6.6-1) ... Setting up openssh-client (1:7.7p1-4) ... Setting up libibverbs-dev:i386 (19.0-1) ... Setting up tcl-dev:i386 (8.6.0+9) ... Setting up python3-distutils (3.6.6-1) ... Setting up python (2.7.15-3) ... Setting up libxcb-sync-dev:i386 (1.13-3) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up libcups2:i386 (2.2.8-5ubuntu1) ... Setting up python-u-msgpack (2.1-1) ... Setting up libarmadillo-dev (1:9.100.5+dfsg-1) ... Setting up libfontconfig1-dev:i386 (2.13.0-5ubuntu3) ... Setting up python-idna (2.6-1) ... Setting up gfortran (4:8.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libx11-xcb-dev:i386 (2:1.6.6-1) ... Setting up libpython-dev:i386 (2.7.15-3) ... Setting up libtiff-dev (4.0.9-6) ... Setting up python-hyperlink (17.3.1-2) ... Setting up libgeotiff-dev:i386 (1.4.2-4) ... Setting up libsm-dev:i386 (2:1.2.2-1) ... Setting up libxcb-render-util0:i386 (0.3.9-1) ... Setting up python-asn1crypto (0.24.0-1) ... Setting up libpoppler-dev:i386 (0.68.0-0ubuntu1) ... Setting up python-attr (17.4.0-2) ... Setting up libxdamage1:i386 (1:1.1.4-3) ... Setting up python-snappy (0.5.3-1) ... Setting up libxcb-image0:i386 (0.4.0-1build1) ... Setting up mesa-common-dev:i386 (18.2.2-0ubuntu1) ... Setting up libxext6:i386 (2:1.3.3-1) ... Setting up libxfixes3:i386 (1:5.0.3-1) ... Setting up libfabric1 (1.6.1-5) ... Setting up libglib2.0-dev-bin (2.58.1-2) ... Setting up python-pyasn1 (0.4.2-3) ... Setting up libssh-gcrypt-4:i386 (0.8.1-1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libgdk-pixbuf2.0-0:i386 (2.38.0+dfsg-6) ... Setting up python-twisted-bin:i386 (18.7.0-3) ... Setting up libvdpau1:i386 (1.1.1-8ubuntu1) ... Setting up libxrender-dev:i386 (1:0.9.10-1) ... Setting up python-pkg-resources (40.2.0-1) ... Setting up libkmlconvenience1:i386 (1.3.0-7) ... Setting up python-pyasn1-modules (0.2.1-0.2) ... Setting up libglib2.0-dev:i386 (2.58.1-2) ... Setting up cython (0.28.4-1) ... Setting up python-wsaccel (0.6.2-1build1) ... Setting up libxcb-dri2-0-dev:i386 (1.13-3) ... Setting up libxcb-render0-dev:i386 (1.13-3) ... Setting up python-configparser (3.5.0b2-1) ... Setting up libegl1:i386 (1.1.0-1) ... Setting up python-cffi-backend (1.11.5-3ubuntu1) ... Setting up libxft-dev:i386 (2.3.2-2) ... Setting up python-incremental (16.10.1-3) ... Setting up libxcb-dri3-dev:i386 (1.13-3) ... Setting up python-six (1.11.0-2) ... Setting up python-constantly (15.1.0-1) ... Setting up python-cbor (1.0.0-1build1) ... Setting up python-zope.interface (4.3.2-1build3) ... Setting up libldap-2.4-2:i386 (2.4.46+dfsg-5ubuntu1) ... Setting up libkmlregionator1:i386 (1.3.0-7) ... Setting up libxext-dev:i386 (2:1.3.3-1) ... Setting up libpango-1.0-0:i386 (1.42.4-3) ... Setting up python-enum34 (1.1.6-2) ... Setting up libxcb-shape0-dev:i386 (1.13-3) ... Setting up python-concurrent.futures (3.2.0-1) ... Setting up libxxf86vm1:i386 (1:1.1.4-1) ... Setting up libva-x11-2:i386 (2.2.0-1) ... Setting up python-ubjson (0.12.0-1) ... Setting up python-ipaddress (1.0.17-1) ... Setting up libxxf86vm-dev:i386 (1:1.1.4-1) ... Setting up libxfixes-dev:i386 (1:5.0.3-1) ... Setting up python-trie (0.2+ds-1) ... Setting up python-automat (0.6.0-1) ... Setting up python-pil:i386 (5.2.0-2) ... Setting up python-future (0.15.2-5) ... update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python2-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up libglx-mesa0:i386 (18.2.2-0ubuntu1) ... Setting up libxi6:i386 (2:1.7.9-1) ... Setting up libcairo2:i386 (1.15.12-1) ... Setting up libxcb-randr0-dev:i386 (1.13-3) ... Setting up libxt-dev:i386 (1:1.1.5-1) ... Setting up libpoppler-private-dev:i386 (0.68.0-0ubuntu1) ... Setting up libopenmpi3:i386 (3.1.2-6) ... Setting up python-lz4 (1.1.0+dfsg-1) ... Setting up libhdf5-openmpi-100:i386 (1.10.0-patch1+docs-4build2) ... Setting up python-nacl (1.2.1-3build1) ... Setting up python-trollius (2.1~b1-5) ... Setting up libxcb-xfixes0-dev:i386 (1.13-3) ... Setting up libcurl3-gnutls:i386 (7.61.0-1ubuntu2) ... Setting up libavutil56:i386 (7:4.0.2-2) ... Setting up libtk8.6:i386 (8.6.8-4) ... Setting up libcurl4:i386 (7.61.0-1ubuntu2) ... Setting up libxdamage-dev:i386 (1:1.1.4-3) ... Setting up python-qrcode (6.0-1) ... update-alternatives: using /usr/bin/python2-qr to provide /usr/bin/qr (qr) in auto mode Setting up openmpi-bin (3.1.2-6) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: error: no alternatives for mpi update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libxss-dev:i386 (1:1.2.3-1) ... Setting up libkml-dev:i386 (1.3.0-7) ... Setting up libpangoft2-1.0-0:i386 (1.42.4-3) ... Setting up libdapclient6v5:i386 (3.19.1-2build1) ... Setting up libpq5:i386 (10.5-1) ... Setting up libnetcdf13:i386 (1:4.6.1-3) ... Setting up python-cryptography (2.3-1ubuntu1) ... Setting up libxcb-present-dev:i386 (1.13-3) ... Setting up cmake (3.12.1-1) ... Setting up libtheora0:i386 (1.1.1+dfsg.1-14) ... Setting up libglx0:i386 (1.1.0-1) ... Setting up libcurl4-gnutls-dev:i386 (7.61.0-1ubuntu2) ... Setting up libnetcdf-dev (1:4.6.1-3) ... Setting up libxerces-c3.2:i386 (3.2.1+debian-2) ... Setting up libswscale5:i386 (7:4.0.2-2) ... Setting up mpi-default-bin (1.13) ... Setting up libavutil-dev:i386 (7:4.0.2-2) ... Setting up libnetcdf-c++4 (4.2-11) ... Setting up libnetcdf-cxx-legacy-dev (4.2-11) ... Setting up tk8.6 (8.6.8-4) ... Setting up libpq-dev (10.5-1) ... Setting up libswresample3:i386 (7:4.0.2-2) ... Setting up python-openssl (18.0.0-1) ... Setting up libtheora-dev:i386 (1.1.1+dfsg.1-14) ... Setting up libopenmpi-dev:i386 (3.1.2-6) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up tk8.6-dev:i386 (8.6.8-4) ... Setting up libpangocairo-1.0-0:i386 (1.42.4-3) ... Setting up mpi-default-dev (1.13) ... Setting up libhdf4-alt-dev (4.2.13-4) ... Setting up libswscale-dev:i386 (7:4.0.2-2) ... Setting up libhdf5-openmpi-dev (1.10.0-patch1+docs-4build2) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode Setting up tk (8.6.0+9) ... Setting up libswresample-dev:i386 (7:4.0.2-2) ... Setting up libgl1:i386 (1.1.0-1) ... Setting up libglu1-mesa:i386 (9.0.0-2.1build1) ... Setting up python-service-identity (16.0.0-2) ... Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ... Setting up python-mpi4py (2.0.0-3build2) ... Setting up librsvg2-2:i386 (2.40.20-3) ... Setting up tk-dev:i386 (8.6.0+9) ... Setting up libglvnd-dev:i386 (1.1.0-1) ... Setting up libhdf5-mpi-dev (1.10.0-patch1+docs-4build2) ... Setting up python-twisted-core (18.7.0-3) ... Setting up libgl1-mesa-dev:i386 (18.2.2-0ubuntu1) ... Setting up libqt5gui5:i386 (5.11.1+dfsg-7ubuntu1) ... Setting up python-twisted (18.7.0-3) ... Setting up libgl2ps-dev (1.4.0+dfsg1-2) ... Setting up libqt5quick5:i386 (5.11.1-6) ... Setting up libavcodec58:i386 (7:4.0.2-2) ... Setting up libglu1-mesa-dev:i386 (9.0.0-2.1build1) ... Setting up libchromaprint1:i386 (1.4.3-2build1) ... Setting up libqt5widgets5:i386 (5.11.1+dfsg-7ubuntu1) ... Setting up python-txaio (2.8.1-1) ... Setting up libavformat58:i386 (7:4.0.2-2) ... Setting up libavcodec-dev:i386 (7:4.0.2-2) ... Setting up libqt5printsupport5:i386 (5.11.1+dfsg-7ubuntu1) ... Setting up libqt5opengl5:i386 (5.11.1+dfsg-7ubuntu1) ... Setting up libavformat-dev:i386 (7:4.0.2-2) ... Setting up python-autobahn (17.10.1+dfsg1-3) ... Setting up libqt5webkit5:i386 (5.212.0~alpha2-12ubuntu1) ... Setting up libharfbuzz-dev:i386 (1.8.8-2) ... Setting up dh-autoreconf (19) ... Setting up libicu-le-hb-dev:i386 (1.0.3+git161113-5) ... Setting up odbcinst (2.3.6-0.1) ... Setting up libicu-dev (60.2-6ubuntu1) ... Setting up libxml2-dev:i386 (2.9.4+dfsg1-7ubuntu1) ... Setting up odbcinst1debian2:i386 (2.3.6-0.1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up libxerces-c-dev (3.2.1+debian-2) ... Setting up unixodbc-dev:i386 (2.3.6-0.1) ... Setting up libdap-dev:i386 (3.19.1-2build1) ... Setting up libgdal20 (2.3.1+dfsg-3build1) ... Setting up libvtk6.3 (6.3.0+dfsg2-2build4) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up libvtk6.3-qt (6.3.0+dfsg2-2build4) ... Setting up python-vtk6 (6.3.0+dfsg2-2build4) ... Setting up libgdal-dev (2.3.1+dfsg-3build1) ... Setting up vtk6 (6.3.0+dfsg2-2build4) ... Setting up libvtk6-jni (6.3.0+dfsg2-2build4) ... Setting up tcl-vtk6 (6.3.0+dfsg2-2build4) ... Setting up libvtk6-java (6.3.0+dfsg2-2build4) ... Setting up libvtk6-dev (6.3.0+dfsg2-2build4) ... Setting up sbuild-build-depends-lammps-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (239-7ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-137-generic amd64 (i686) Toolchain package versions: binutils_2.31.1-6ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-7_7.3.0-29ubuntu1 g++-8_8.2.0-7ubuntu1 gcc-7_7.3.0-29ubuntu1 gcc-8_8.2.0-7ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-7-dev_7.3.0-29ubuntu1 libstdc++-8-dev_8.2.0-7ubuntu1 libstdc++6_8.2.0-7ubuntu1 linux-libc-dev_4.18.0-9.10 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-1.1ubuntu1 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu6 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-6ubuntu1 binutils-common_2.31.1-6ubuntu1 binutils-i686-linux-gnu_2.31.1-6ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-9 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python-pyasn1_0.4.2-3 python-pyasn1-modules_0.2.1-0.2 python-qrcode_6.0-1 python-service-identity_16.0.0-2 python-six_1.11.0-2 python-snappy_0.5.3-1 python-trie_0.2+ds-1 python-trollius_2.1~b1-5 python-twisted_18.7.0-3 python-twisted-bin_18.7.0-3 python-twisted-core_18.7.0-3 python-txaio_2.8.1-1 python-u-msgpack_2.1-1 python-ubjson_0.12.0-1 python-vtk6_6.3.0+dfsg2-2build4 python-wsaccel_0.6.2-1build1 python-zope.interface_4.3.2-1build3 python2_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-4ubuntu4 python2.7-minimal_2.7.15-4ubuntu4 python3_3.6.6-1 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.6-1 python3.6_3.6.7~rc1-1 python3.6-minimal_3.6.7~rc1-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-lammps-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 shared-mime-info_1.10-1 systemd_239-7ubuntu9 systemd-sysv_239-7ubuntu9 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tcl_8.6.0+9 tcl-dev_8.6.0+9 tcl-vtk6_6.3.0+dfsg2-2build4 tcl8.6_8.6.8+dfsg-4 tcl8.6-dev_8.6.8+dfsg-4 tk_8.6.0+9 tk-dev_8.6.0+9 tk8.6_8.6.8-4 tk8.6-dev_8.6.8-4 tzdata_2018e-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038 unixodbc-dev_2.3.6-0.1 util-linux_2.32-0.1ubuntu1 uuid-dev_2.32-0.1ubuntu1 voro++-dev_0.4.6+dfsg1-2 vtk6_6.3.0+dfsg2-2build4 x11-common_1:7.7+19ubuntu8 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-scrnsaver-dev_2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xkb-data_2.23.1-1ubuntu1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Sep 13 18:53:21 2018 UTC gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lammps_0~20180822.gitb47e49223+dfsg1-2.dsc dpkg-source: info: extracting lammps in lammps-0~20180822.gitb47e49223+dfsg1 dpkg-source: info: unpacking lammps_0~20180822.gitb47e49223+dfsg1.orig.tar.xz dpkg-source: info: unpacking lammps_0~20180822.gitb47e49223+dfsg1-2.debian.tar.xz dpkg-source: info: applying 10_enable_spglib.patch dpkg-source: info: applying 20_set_potentials_path.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15524756 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15524756 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15524756 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 0~20180822.gitb47e49223+dfsg1-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build lammps-0~20180822.gitb47e49223+dfsg1 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --sourcedirectory=cmake --builddirectory=/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1' dh_auto_clean rm -rf /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build make[1]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1' dh_clean -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build debian/rules build-arch dh build-arch --sourcedirectory=cmake --builddirectory=/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build dh_update_autotools_config -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_autoreconf -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1' dh_auto_configure -- \ -DPKG_ASPHERE=ON \ -DPKG_BODY=ON \ -DPKG_CLASS2=ON \ -DPKG_COLLOID=ON \ -DPKG_COMPRESS=ON \ -DPKG_CORESHELL=ON \ -DPKG_DIPOLE=ON \ -DPKG_GPU=ON \ -DPKG_GRANULAR=ON \ -DPKG_KIM=OFF \ -DPKG_KSPACE=ON \ -DPKG_MANYBODY=ON \ -DPKG_MC=ON \ -DPKG_MEAM=ON \ -DPKG_MISC=ON \ -DPKG_MOLECULE=ON \ -DPKG_MPIIO=ON \ -DPKG_OPT=ON \ -DPKG_PERI=ON \ -DPKG_POEMS=ON \ -DPKG_PYTHON=ON \ -DPKG_QEQ=ON \ -DPKG_REAX=OFF \ -DPKG_REPLICA=ON \ -DPKG_RIGID=ON \ -DPKG_SHOCK=ON \ -DPKG_SNAP=ON \ -DPKG_SRD=ON \ -DPKG_USER-ATC=ON \ -DPKG_USER-AWPMD=ON \ -DPKG_USER-BOCS=ON \ -DPKG_USER-CGDNA=ON \ -DPKG_USER-CGSDK=ON \ -DPKG_USER-DIFFRACTION=ON \ -DPKG_USER-DPD=ON \ -DPKG_USER-DRUDE=ON \ -DPKG_USER-EFF=ON \ -DPKG_USER-FEP=ON \ -DPKG_USER-H5MD=ON \ -DPKG_USER-LB=ON \ -DPKG_USER-MANIFOLD=ON \ -DPKG_USER-MEAMC=ON \ -DPKG_USER-MESO=ON \ -DPKG_USER-MGPT=ON \ -DPKG_USER-MISC=ON \ -DPKG_USER-MOFFF=ON \ -DPKG_USER-MOLFILE=ON \ -DPKG_USER-NETCDF=ON \ -DPKG_USER-OMP=ON \ -DPKG_USER-PHONON=ON \ -DPKG_USER-QTB=ON \ -DPKG_USER-REAXC=OFF \ -DPKG_USER-SMD=ON \ -DPKG_USER-SMTBQ=ON \ -DPKG_USER-SPH=ON \ -DPKG_USER-TALLY=ON \ -DPKG_USER-UEF=ON \ -DPKG_USER-VTK=ON \ -DPKG_VORONOI=ON cd debian/build && cmake ../../cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DPKG_ASPHERE=ON -DPKG_BODY=ON -DPKG_CLASS2=ON -DPKG_COLLOID=ON -DPKG_COMPRESS=ON -DPKG_CORESHELL=ON -DPKG_DIPOLE=ON -DPKG_GPU=ON -DPKG_GRANULAR=ON -DPKG_KIM=OFF -DPKG_KSPACE=ON -DPKG_MANYBODY=ON -DPKG_MC=ON -DPKG_MEAM=ON -DPKG_MISC=ON -DPKG_MOLECULE=ON -DPKG_MPIIO=ON -DPKG_OPT=ON -DPKG_PERI=ON -DPKG_POEMS=ON -DPKG_PYTHON=ON -DPKG_QEQ=ON -DPKG_REAX=OFF -DPKG_REPLICA=ON -DPKG_RIGID=ON -DPKG_SHOCK=ON -DPKG_SNAP=ON -DPKG_SRD=ON -DPKG_USER-ATC=ON -DPKG_USER-AWPMD=ON -DPKG_USER-BOCS=ON -DPKG_USER-CGDNA=ON -DPKG_USER-CGSDK=ON -DPKG_USER-DIFFRACTION=ON -DPKG_USER-DPD=ON -DPKG_USER-DRUDE=ON -DPKG_USER-EFF=ON -DPKG_USER-FEP=ON -DPKG_USER-H5MD=ON -DPKG_USER-LB=ON -DPKG_USER-MANIFOLD=ON -DPKG_USER-MEAMC=ON -DPKG_USER-MESO=ON -DPKG_USER-MGPT=ON -DPKG_USER-MISC=ON -DPKG_USER-MOFFF=ON -DPKG_USER-MOLFILE=ON -DPKG_USER-NETCDF=ON -DPKG_USER-OMP=ON -DPKG_USER-PHONON=ON -DPKG_USER-QTB=ON -DPKG_USER-REAXC=OFF -DPKG_USER-SMD=ON -DPKG_USER-SMTBQ=ON -DPKG_USER-SPH=ON -DPKG_USER-TALLY=ON -DPKG_USER-UEF=ON -DPKG_USER-VTK=ON -DPKG_VORONOI=ON -- The CXX compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Running check for auto-generated files from make-based build system -- Found MPI_CXX: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- The Fortran compiler identification is GNU 8.2.0 -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes -- The C compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Found FFTW3: /usr/lib/i386-linux-gnu/libfftw3.so -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Found BLAS: /usr/lib/i386-linux-gnu/libblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Found PythonInterp: /usr/bin/python (found version "2.7.15") -- Found PythonLibs: /usr/lib/i386-linux-gnu/libpython2.7.so (found version "2.7.15+") -- Found JPEG: /usr/lib/i386-linux-gnu/libjpeg.so (found version "80") -- Found PNG: /usr/lib/i386-linux-gnu/libpng.so (found version "1.6.34") -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") -- Found GZIP: /bin/gzip -- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) -- Found VORO: /usr/lib/i386-linux-gnu/libvoro++.so -- Found NetCDF: /usr/lib/i386-linux-gnu/libnetcdf.so -- The imported target "vtkRenderingPythonTkWidgets" references the file "/usr/lib/i386-linux-gnu/libvtkRenderingPythonTkWidgets.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtk" references the file "/usr/bin/vtk" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- Looking for C++ include math.h -- Looking for C++ include math.h - found -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/i386-linux-gnu/libpthread.so;/usr/lib/i386-linux-gnu/libsz.so;/usr/lib/i386-linux-gnu/libz.so;/usr/lib/i386-linux-gnu/libdl.so;/usr/lib/i386-linux-gnu/libm.so (found version "1.10.0.1") -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib/i386-linux-gnu/libOpenCL.so (found version "2.2") Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/atom_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/beck_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_long_cs_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_wolf_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_wolf_cs_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/buck_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/buck_coul_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/buck_coul_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/charmm_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/colloid_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_debye_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_dsf_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_long_cs_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/device_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dipole_lj_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dipole_lj_sf_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dipole_long_lj_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dpd_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/eam_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/ellipsoid_nbor_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/gauss_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj96_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_class2_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_debye_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_msm_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_cubic_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_dsf_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_expand_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_expand_coul_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_gromacs_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_sdk_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_sdk_long_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/mie_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/morse_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/neighbor_cpu_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/neighbor_gpu_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/pppm_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/re_squared_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/re_squared_lj_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/soft_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/sw_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/table_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/tersoff_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/tersoff_mod_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/tersoff_zbl_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/ufm_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/vashishta_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/yukawa_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/yukawa_colloid_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/zbl_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/gayberne_cl.h... Creating /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/gayberne_lj_cl.h... -- Generating style_angle.h... -- Generating style_atom.h... -- Generating style_body.h... -- Generating style_bond.h... -- Generating style_command.h... -- Generating style_compute.h... -- Generating style_dihedral.h... -- Generating style_dump.h... -- Generating style_fix.h... -- Generating style_improper.h... -- Generating style_integrate.h... -- Generating style_kspace.h... -- Generating style_minimize.h... -- Generating style_nbin.h... -- Generating style_npair.h... -- Generating style_nstencil.h... -- Generating style_ntopo.h... -- Generating style_pair.h... -- Generating style_reader.h... -- Generating style_region.h... -- Generating lmpinstalledpkgs.h... -- Building package: ASPHERE -- Building package: BODY -- Building package: CLASS2 -- Building package: COLLOID -- Building package: COMPRESS -- Building package: DIPOLE -- Building package: GRANULAR -- Building package: KSPACE -- Building package: MANYBODY -- Building package: MC -- Building package: MEAM -- Building package: MISC -- Building package: MOLECULE -- Building package: PERI -- Building package: REPLICA -- Building package: RIGID -- Building package: SHOCK -- Building package: SNAP -- Building package: SRD -- Building package: PYTHON -- Building package: MPIIO -- Building package: VORONOI -- Building package: POEMS -- Building package: USER-ATC -- Building package: USER-AWPMD -- Building package: USER-BOCS -- Building package: USER-CGDNA -- Building package: USER-MESO -- Building package: USER-CGSDK -- Building package: USER-DIFFRACTION -- Building package: USER-DPD -- Building package: USER-DRUDE -- Building package: USER-EFF -- Building package: USER-FEP -- Building package: USER-H5MD -- Building package: USER-LB -- Building package: USER-MANIFOLD -- Building package: USER-MEAMC -- Building package: USER-MGPT -- Building package: USER-MISC -- Building package: USER-MOFFF -- Building package: USER-MOLFILE -- Building package: USER-NETCDF -- Building package: USER-PHONON -- Building package: USER-QTB -- Building package: USER-SMD -- Building package: USER-SMTBQ -- Building package: USER-SPH -- Building package: USER-TALLY -- Building package: USER-UEF -- Building package: USER-VTK -- Building package: USER-OMP -- Building package: OPT -- Building package: GPU -- The following packages have been found: * MPI * OpenMP * PkgConfig * FFTW3 * BLAS * Threads * LAPACK * PythonInterp * PythonLibs * JPEG * PNG * VORO * NetCDF * Eigen3 * VTK * ZLIB * HDF5 * OpenCL -- <<< Build configuration >>> Build type None Install path /usr Compilers and Flags: C++ Compiler /usr/bin/c++ Type GNU Version 8.2.0 C++ Flags -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp Defines LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;FFT_FFTW;LMP_PYTHON;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;LMP_HAS_NETCDF;NC_64BIT_DATA=0x0020;vtkFiltersFlowPaths_AUTOINIT=1(vtkFiltersParallelFlowPaths);vtkIOExodus_AUTOINIT=1(vtkIOParallelExodus);vtkIOGeometry_AUTOINIT=1(vtkIOMPIParallel);vtkIOImage_AUTOINIT=1(vtkIOMPIImage);vtkIOParallel_AUTOINIT=1(vtkIOMPIParallel);vtkIOSQL_AUTOINIT=2(vtkIOMySQL,vtkIOPostgreSQL);vtkRenderingContext2D_AUTOINIT=1(vtkRenderingContextOpenGL);vtkRenderingCore_AUTOINIT=3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL);vtkRenderingFreeType_AUTOINIT=2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib);vtkRenderingLIC_AUTOINIT=1(vtkRenderingParallelLIC);vtkRenderingVolume_AUTOINIT=1(vtkRenderingVolumeOpenGL);LAMMPS_VTK -- Fortran Compiler /usr/bin/gfortran Type GNU Version 8.2.0 Fortran Flags -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -- C Compiler /usr/bin/cc Type GNU Version 8.2.0 C Flags -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -- Linker flags: Executable -Wl,-Bsymbolic-functions -Wl,-z,relro -- Static libraries -- Link libraries: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so;/usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so;/usr/lib/i386-linux-gnu/libfftw3.so;/usr/lib/i386-linux-gnu/libpython2.7.so;/usr/lib/i386-linux-gnu/libjpeg.so;/usr/lib/i386-linux-gnu/libpng.so;/usr/lib/i386-linux-gnu/libz.so;/usr/lib/i386-linux-gnu/libvoro++.so;molfile;/usr/lib/i386-linux-gnu/libnetcdf.so;vtkChartsCore;vtkCommonColor;vtkCommonDataModel;vtkCommonMath;vtkCommonCore;vtksys;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkInfovisCore;vtkFiltersExtraction;vtkCommonExecutionModel;vtkFiltersCore;vtkFiltersGeneral;vtkCommonComputationalGeometry;vtkFiltersStatistics;vtkImagingFourier;vtkImagingCore;vtkalglib;vtkRenderingContext2D;vtkRenderingCore;vtkFiltersGeometry;vtkFiltersSources;vtkRenderingFreeType;/usr/lib/i386-linux-gnu/libfreetype.so;vtkftgl;vtkDICOMParser;vtkDomainsChemistry;vtkIOXML;vtkIOGeometry;vtkIOCore;vtkIOXMLParser;/usr/lib/i386-linux-gnu/libexpat.so;vtkFiltersAMR;vtkParallelCore;vtkIOLegacy;vtkFiltersFlowPaths;vtkFiltersGeneric;vtkFiltersHybrid;vtkImagingSources;vtkFiltersHyperTree;vtkFiltersImaging;vtkImagingGeneral;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelFlowPaths;vtkParallelMPI;vtkFiltersParallelGeometry;vtkFiltersParallelImaging;vtkFiltersParallelMPI;vtkFiltersParallelStatistics;vtkFiltersProgrammable;vtkFiltersPython;vtkWrappingPythonCore;vtkWrappingTools;vtkFiltersReebGraph;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersTexture;vtkFiltersVerdict;verdict;vtkGeovisCore;vtkInfovisLayout;vtkImagingHybrid;vtkIOImage;vtkmetaio;/usr/lib/i386-linux-gnu/libtiff.so;vtkInfovisBoostGraphAlgorithms;vtkInteractionStyle;vtkInteractionWidgets;vtkRenderingAnnotation;vtkImagingColor;vtkRenderingVolume;vtkViewsCore;/usr/lib/i386-linux-gnu/libproj.so;vtkIOAMR;/usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/i386-linux-gnu/libsz.so;/usr/lib/i386-linux-gnu/libdl.so;/usr/lib/i386-linux-gnu/libm.so;vtkIOEnSight;vtkIOExodus;vtkexoIIc;/usr/lib/i386-linux-gnu/libnetcdf_c++.so;vtkIOExport;vtkRenderingGL2PS;vtkRenderingContextOpenGL;vtkRenderingOpenGL;/usr/lib/i386-linux-gnu/libgl2ps.so;vtkRenderingLabel;vtkIOFFMPEG;vtkIOMovie;/usr/lib/i386-linux-gnu/libtheoraenc.so;/usr/lib/i386-linux-gnu/libtheoradec.so;/usr/lib/i386-linux-gnu/libogg.so;vtkIOGDAL;vtkIOGeoJSON;vtkIOImport;vtkIOInfovis;/usr/lib/i386-linux-gnu/libxml2.so;vtkIOLSDyna;vtkIOMINC;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallel;vtkIONetCDF;/usr/lib/i386-linux-gnu/libjsoncpp.so;vtkIOMySQL;vtkIOSQL;sqlite3;vtkIOODBC;vtkIOPLY;vtkIOParallelExodus;vtkIOParallelLSDyna;vtkIOParallelNetCDF;vtkIOParallelXML;vtkIOPostgreSQL;vtkIOVPIC;VPIC;vtkIOVideo;vtkIOXdmf2;vtkxdmf2;vtkImagingMath;vtkImagingMorphological;vtkImagingStatistics;vtkImagingStencil;vtkInteractionImage;vtkLocalExample;vtkParallelMPI4Py;vtkPythonInterpreter;vtkRenderingExternal;vtkRenderingFreeTypeFontConfig;vtkRenderingImage;vtkRenderingLIC;vtkRenderingLOD;vtkRenderingMatplotlib;vtkRenderingParallel;vtkRenderingParallelLIC;vtkRenderingVolumeAMR;vtkRenderingVolumeOpenGL;vtkTestingGenericBridge;vtkTestingIOSQL;vtkTestingRendering;vtkViewsContext2D;vtkViewsGeovis;vtkViewsInfovis;vtkWrappingJava;m;meam;poems;atc;awpmd;h5md;gpu;gfortran;gcc_s;gcc;quadmath;c -- Using mpi with headers in /usr/lib/i386-linux-gnu/openmpi/include/openmpi;/usr/lib/i386-linux-gnu/openmpi/include and /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so;/usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -- GPU Api: OPENCL -- OCL Tune: GENERIC -- GPU Precision: MIXED -- Using FFTW3 as FFT -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build make[1]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1' dh_auto_build -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build cd debian/build && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' /usr/bin/cmake -H"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" -B"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake" --color= make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/meam.dir/DependInfo.cmake" --color= make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= Scanning dependencies of target meam make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' Scanning dependencies of target awpmd make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/build Scanning dependencies of target h5md make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 0%] Building C object CMakeFiles/h5md.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c.o /usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -I/usr/include/hdf5/serial -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/h5md.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c" [ 0%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_data.F.o /usr/bin/gfortran 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/fm_exp.c.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/fm_exp.c" /usr/bin/cmake -E cmake_copy_f90_mod meam_data.mod CMakeFiles/meam.dir/meam_data.mod.stamp GNU /usr/bin/cmake -E touch CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_data.F.o.provides.build [ 0%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 0%] Linking C static library libh5md.a /usr/bin/cmake -P CMakeFiles/h5md.dir/cmake_clean_target.cmake [ 0%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F.o" /usr/bin/cmake -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1 f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] /usr/bin/ar qc libh5md.a "CMakeFiles/h5md.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c.o" /usr/bin/ranlib libh5md.a make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 0%] Built target h5md make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= [ 0%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 1%] Building CXX object CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp" Scanning dependencies of target gpu make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 1%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp" [ 1%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] Scanning dependencies of target atc make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 1%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 1%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 1%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_global.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_global.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_global.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 2%] Building Fortran object CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F" -o "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F.o" f951: Warning: Nonexistent include directory ‘/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR’ [-Wmissing-include-dirs] [ 2%] Linking Fortran static library libmeam.a /usr/bin/cmake -P CMakeFiles/meam.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/meam.dir/link.txt --verbose=1 /usr/bin/ar qc libmeam.a "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/fm_exp.c.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_data.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_global.F.o" "CMakeFiles/meam.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F.o" /usr/bin/ranlib libmeam.a make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 2%] Built target meam make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= Scanning dependencies of target poems make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body.cpp" [ 2%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body23joint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body23joint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body23joint.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatmap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatmap.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatmap.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatrix.cpp" [ 2%] Building CXX object CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp" [ 2%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/eulerparameters.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/eulerparameters.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/eulerparameters.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fastmatrixops.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fastmatrixops.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fastmatrixops.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fixedpoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fixedpoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fixedpoint.cpp" [ 2%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/freebodyjoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/freebodyjoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/freebodyjoint.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/inertialframe.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/inertialframe.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/inertialframe.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/joint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/joint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/joint.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat3x3.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat3x3.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat3x3.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat4x4.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat4x4.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat4x4.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat6x6.cpp.o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat6x6.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat6x6.cpp" [ 3%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrix.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 3%] Linking CXX static library libawpmd.a /usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/awpmd.dir/link.txt --verbose=1 /usr/bin/ar qc libawpmd.a "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o" "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" "CMakeFiles/awpmd.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" /usr/bin/ranlib libawpmd.a make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrixfun.cpp.o [ 3%] Built target awpmd make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrixfun.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrixfun.cpp" make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= Scanning dependencies of target ocl_get_devices make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 3%] Building CXX object CMakeFiles/ocl_get_devices.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DUCL_OPENCL -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/ocl_get_devices.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:35, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mixedjoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mixedjoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mixedjoint.cpp" [ 3%] Linking CXX executable ocl_get_devices /usr/bin/cmake -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic "CMakeFiles/ocl_get_devices.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -o ocl_get_devices -lOpenCL [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/norm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/norm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/norm.cpp" make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 3%] Built target ocl_get_devices [ 3%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onbody.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onbody.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onbody.cpp" [ 3%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingEnergy.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onfunctions.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onfunctions.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onfunctions.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onsolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onsolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onsolver.cpp" [ 3%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/particle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/particle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/particle.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemsobject.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemsobject.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemsobject.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemstreenode.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemstreenode.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemstreenode.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/point.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/point.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/point.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/prismaticjoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/prismaticjoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/prismaticjoint.cpp" [ 4%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/revolutejoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/revolutejoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/revolutejoint.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rigidbody.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rigidbody.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rigidbody.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rowmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rowmatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rowmatrix.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/solver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/solver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/solver.cpp" [ 4%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMass.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMass.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMass.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/sphericaljoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/sphericaljoint.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/sphericaljoint.cpp" [ 4%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/system.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/system.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/system.cpp" [ 4%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp" [ 4%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect3.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect3.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect3.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect4.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect4.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect4.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect6.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect6.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect6.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualcolmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualcolmatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualcolmatrix.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualmatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualmatrix.cpp" [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL 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-I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualrowmatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualrowmatrix.cpp" [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 5%] Building CXX object CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/workspace.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/workspace.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/workspace.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 5%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp" [ 5%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp" [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>[ 7%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o /lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/BodyForce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/BodyForce.cpp" /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp" [ 8%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 8%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CauchyBorn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CbPotential.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CbPotential.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ConcentrationRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ConcentrationRegulator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ConcentrationRegulator.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronChargeDensity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronChargeDensity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronChargeDensity.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronDragPower.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronDragPower.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronDragPower.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronFlux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronFlux.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronFlux.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatFlux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatFlux.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatFlux.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronPhononExchange.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronPhononExchange.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronPhononExchange.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp" [ 10%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp" [ 10%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp" [ 10%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Interpolate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Interpolate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Interpolate.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp:27: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Function.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Function.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Function.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/InterscaleOperators.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/InterscaleOperators.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/InterscaleOperators.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KernelFunction.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KernelFunction.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KernelFunction.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp" [ 12%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp" [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MPI_Wrappers.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MPI_Wrappers.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MPI_Wrappers.cpp" [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Material.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Material.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Material.cpp" [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.cpp" [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MeshReader.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MeshReader.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MeshReader.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MoleculeSet.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MoleculeSet.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MoleculeSet.cpp" [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp" [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PaqAtcUtility.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PaqAtcUtility.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PaqAtcUtility.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp: In member function ‘void ATC::OutputManager::read_restart_file(std::__cxx11::string, ATC::RESTART_LIST*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp:164:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&myVal,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp" [ 14%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PolynomialSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PolynomialSolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PolynomialSolver.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PrescribedDataManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PrescribedDataManager.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PrescribedDataManager.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Quadrature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Quadrature.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Quadrature.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Stress.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Stress.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Stress.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp:18: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeFilter.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeFilter.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeFilter.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:35, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_kernel.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.cpp" [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp:25: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp" [ 15%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.h:20, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Vector.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Vector.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Vector.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp:27: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ViscousStress.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ViscousStress.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ViscousStress.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationDiffusion.cpp" [ 16%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp" [ 16%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp" [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp" [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp" [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp" [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMomentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMomentum.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMomentum.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.h:21, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp:26: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.h:21, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp:22: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp" [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 17%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 18%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 18%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp" [ 18%] Building CXX object CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPoisson.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPoisson.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPoisson.cpp" [ 18%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 18%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.cpp" [ 18%] Building CXX object CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl_ext.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl_ext.cpp" In file included from /usr/include/CL/cl.h:36, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.h:19, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/main.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/main.cpp" [ 18%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp" [ 18%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle.cpp" [ 18%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp: In member function ‘virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp:133:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp:338:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp:347:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp:350:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_map.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_map.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_atomic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_atomic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_atomic.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_body.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_charge.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_charge.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_charge.cpp" [ 19%] Building CXX object 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_ellipsoid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_ellipsoid.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_line.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_line.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_sphere.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_tri.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/balance.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/balance.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/body.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/citeme.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/citeme.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/citeme.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/change_box.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/change_box.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/change_box.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp:322:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp:331:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp:334:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp: In member function ‘virtual void LAMMPS_NS::BondZero::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp:131:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_brick.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_brick.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_brick.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_tiled.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" 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"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_tiled.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_aggregate_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_aggregate_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_aggregate_atom.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle_local.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angmom_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_centro_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_centro_atom.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_chunk_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_chunk_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_chunk_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cluster_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cluster_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cluster_atom.cpp" [ 21%] Building CXX object 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cna_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cna_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com_chunk.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_contact_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_contact_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_contact_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_coord_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_coord_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_coord_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dipole_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dipole_chunk.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_displace_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_displace_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_displace_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_fragment_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_fragment_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_fragment_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_global_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_global_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_global_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_group_group.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_group_group.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_group_group.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration_chunk.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_heat_flux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_hexorder_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_hexorder_atom.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper_local.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_inertia_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_inertia_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_inertia_chunk.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke_atom.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd_chunk.cpp" [ 22%] Building CXX object 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair_local.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe.cpp" [ 23%] Building CXX object 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe_atom.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pressure.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pressure.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pressure.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_atom.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_chunk.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_local.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_rdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_rdf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_rdf.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce_region.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce_region.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_slice.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_slice.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_slice.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_stress_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_chunk.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_com.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_com.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_com.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_deform.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_deform.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_deform.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_partial.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_profile.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_profile.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_ramp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_region.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_region.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_sphere.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_torque_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vacf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vacf.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vcm_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vcm_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vcm_chunk.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_atoms.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_atoms.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_atoms.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_bonds.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_bonds.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_bonds.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_box.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_atoms.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_atoms.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_bonds.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_bonds.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_bonds.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_zero.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_zero.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp:323:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp:332:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp:335:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/displace_atoms.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/displace_atoms.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/displace_atoms.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/domain.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/domain.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/domain.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_cfg.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_cfg.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_custom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_custom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_custom.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_dcd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_dcd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_dcd.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_image.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_image.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_image.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_local.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_movie.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_movie.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_movie.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_xyz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_xyz.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_xyz.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/error.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/error.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/error.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/finish.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/finish.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/finish.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_adapt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_adapt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_adapt.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_addforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_addforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_addforce.cpp" [ 26%] Building CXX object 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_atom.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp: In member function ‘virtual void LAMMPS_NS::FixAveChunk::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp:1058:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp: In member function ‘virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp:537:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp: In member function ‘virtual void LAMMPS_NS::FixAveHisto::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp:828:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp: In member function ‘virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp:499:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_aveforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_aveforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_aveforce.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp:700:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp:911:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_balance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_balance.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_balance.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_box_relax.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_box_relax.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_box_relax.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_controller.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_controller.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_controller.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deform.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deform.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deform.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deprecated.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deprecated.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_drag.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_drag.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_drag.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_dt_reset.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_dt_reset.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_dt_reset.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_enforce2d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_enforce2d.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_enforce2d.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_external.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_external.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_external.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_gravity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_group.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_group.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_heat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_heat.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_heat.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp: In member function ‘virtual void LAMMPS_NS::FixHalt::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp:187:15: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘LAMMPS_NS::bigint’ {aka ‘long long int’} [-Wformat=] sprintf(str,"Fix halt %s condition met on step %ld with value %g", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ id,update->ntimestep,attvalue); ~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_indent.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_indent.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_indent.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_langevin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_langevin.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_langevin.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_lineforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_lineforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_lineforce.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_minimize.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_minimize.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_minimize.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_momentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_momentum.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_momentum.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_move.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_move.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_move.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_neigh_history.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON 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-I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_limit.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_limit.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_limit.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_noforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_noforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_noforce.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_sphere.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sllod.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sllod.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sphere.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_planeforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_planeforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_planeforce.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_press_berendsen.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_press_berendsen.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_press_berendsen.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_print.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_print.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_print.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_property_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_property_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_property_atom.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_read_restart.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_read_restart.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_read_restart.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_recenter.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_recenter.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_recenter.cpp" [ 29%] Building CXX object 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_setforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_setforce.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_chunk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_chunk.cpp" [ 29%] Building CXX object 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_force.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_force.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_state.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_state.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_state.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_berendsen.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_berendsen.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_berendsen.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csld.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csvr.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csvr.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_rescale.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_rescale.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_rescale.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_tmd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_vector.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_vector.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_viscous.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_viscous.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_viscous.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_harmonic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_harmonic.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj1043.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj1043.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj1043.cpp" [ 31%] Building CXX object 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-I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj126.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj126.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj93.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_reflect.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_reflect.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_region.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_region.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_region.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/force.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/force.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/force.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/image.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/image.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/image.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp: In member function ‘void LAMMPS_NS::Group::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp:730:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&ngroup,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp:742:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp:746:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(names[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_group.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_neigh.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_neigh.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_store.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_store.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_store.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_time.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_time.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_time.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_var.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_var.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_var.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_zero.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_zero.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp:320:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp:329:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp:332:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/info.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/info.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/info.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/input.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/input.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/input.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/integrate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/integrate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/integrate.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/irregular.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/irregular.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/irregular.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/lammps.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/lammps.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/lammps.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/lattice.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/lattice.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/lattice.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp: In function ‘void lammps_create_atoms(void*, int, LAMMPS_NS::tagint*, int*, double*, double*, LAMMPS_NS::imageint*, int)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp:1517:19: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘LAMMPS_NS::bigint’ {aka ‘long long int’} [-Wformat=] sprintf(str,"Library warning in lammps_create_atoms, " ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "invalid total atoms %ld %ld",lmp->atom->natoms,natoms_prev+n); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp:1517:19: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘LAMMPS_NS::bigint’ {aka ‘long long int’} [-Wformat=] [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_extra.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_extra.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_extra.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/memory.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/memory.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/memory.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_special.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_special.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_special.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_cg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_cg.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_cg.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_fire.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_fire.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_fire.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_hftn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_hftn.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_hftn.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_linesearch.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_linesearch.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_linesearch.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_quickmin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_quickmin.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_quickmin.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_sd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_sd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_sd.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/minimize.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/minimize.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/minimize.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/molecule.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/molecule.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/molecule.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin_standard.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin_standard.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin_standard.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp: In member function ‘int LAMMPS_NS::Modify::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1363:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1380:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1383:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(id_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1386:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1389:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(style_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1392:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1395:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(state_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1405:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_peratom,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1422:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1425:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(id_restart_peratom[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1428:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1431:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(style_restart_peratom[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1434:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_list.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_list.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_list.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_request.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_request.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_request.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/neighbor.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/neighbor.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/neighbor.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_copy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_atomonly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_atomonly.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_atomonly.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_ghost.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_ghost.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_ghost.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_multi.cpp.o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_multi.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_multi.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq_ghost.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq_ghost.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq_ghost.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_atomonly_newton.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_atomonly_newton.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_atomonly_newton.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff_ghost.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff_ghost.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff_ghost.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newton.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newton_tri.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newton_tri.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newtoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newtoff.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newton.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newton_tri.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newton_tri.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff_ghost.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff_ghost.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff_ghost.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newton.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newton.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newton.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newtoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newtoff.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newton.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_nsq_newtoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_nsq_newtoff.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_nsq_newton.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton_tri.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton_tri.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton_tri.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newtoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newtoff.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newton.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newton.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newton.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_halffull_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_respa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_respa.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_respa.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on_oneside.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on_oneside.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on_oneside.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_2d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_2d.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_2d.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_3d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_3d.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_3d.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_ghost_bin_2d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_2d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_2d.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_2d.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_3d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_3d.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_3d.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newtoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newtoff.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newton.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newton.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newton.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newton_tri.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newton.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newton.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newton_tri.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_2d_newtoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_2d_newtoff.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o /usr/bin/c++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_3d_newtoff.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton_tri.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton_tri.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton_tri.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newtoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton_tri.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton_tri.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton_tri.cpp" [ 37%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_all.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_all.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_partial.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_partial.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_partial.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_template.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_all.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_all.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_partial.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_partial.cpp.o" -c 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_template.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_template.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_all.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_template.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_template.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_all.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_partial.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_partial.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_template.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_template.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_template.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/output.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/output.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/output.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp: In member function ‘virtual void LAMMPS_NS::PairBeck::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:282:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:286:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&AA[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:287:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&BB[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:288:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&beta[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:291:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp: In member function ‘virtual void LAMMPS_NS::PairBeck::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp: In member function ‘virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:334:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:338:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:339:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:340:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:341:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:342:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:343:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp: In member function ‘virtual void LAMMPS_NS::PairBorn::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:374:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:376:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:377:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:365:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:369:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:372:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:373:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:374:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulWolf::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:406:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:407:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:408:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:409:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:410:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:366:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:372:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:373:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:374:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:375:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulDSF::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:407:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:408:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:409:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:410:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:411:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:312:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:317:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:349:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:350:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:351:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:366:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:372:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:373:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:374:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:405:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:406:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:407:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:408:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:409:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp:249:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp:252:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp:276:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp:277:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp:278:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDebye::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp:153:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp:154:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp:155:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp:156:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDSF::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp:257:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDSF::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp:282:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp:283:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp:284:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_streitz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_streitz.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_streitz.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp:254:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulWolf::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp:278:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp:279:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp:280:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp: In member function ‘virtual void LAMMPS_NS::PairDPD::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:319:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:323:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:324:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:325:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp: In member function ‘virtual void LAMMPS_NS::PairDPD::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:353:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:354:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:355:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:356:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDTstat::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:234:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:238:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:239:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDTstat::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:267:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&t_start,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:268:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&t_stop,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:269:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:270:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:271:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid_overlay.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid_overlay.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid_overlay.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp: In member function ‘virtual void LAMMPS_NS::PairGauss::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:285:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:291:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp: In member function ‘virtual void LAMMPS_NS::PairGauss::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:318:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:319:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:668:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:685:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:688:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:694:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:698:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(special_lj[m],sizeof(double),4,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:701:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:705:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(special_coul[m],sizeof(double),4,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ96Cut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:612:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:616:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:617:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:618:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ96Cut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:647:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:648:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:649:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:650:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCubic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:283:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:287:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:288:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCubic::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:317:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:606:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:610:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:611:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:612:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:641:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:642:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:643:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:644:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:357:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:361:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:362:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:363:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:364:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:396:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:397:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp:174:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp:175:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp:176:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp:177:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp:178:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:380:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:384:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:385:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:416:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:419:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:420:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:421:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:375:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:379:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:380:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:381:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:412:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:413:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:414:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:415:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:416:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp: In member function ‘virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:328:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:332:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:333:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:334:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:335:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp: In member function ‘virtual void LAMMPS_NS::PairLJExpand::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:364:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:365:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:366:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:367:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:345:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:349:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:350:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:351:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:352:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacs::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:382:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:384:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:385:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:383:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:419:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:420:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:421:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:422:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:356:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:360:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:361:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:362:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:363:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmooth::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:393:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:396:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairMIECut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:633:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:637:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:638:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:639:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamR[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:640:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamA[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:641:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairMIECut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:672:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:673:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:674:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:675:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:287:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:291:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:292:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:293:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp: In member function ‘virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:269:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:273:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:274:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:275:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:276:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp: In member function ‘virtual void LAMMPS_NS::PairMorse::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:304:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:305:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:306:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp: In member function ‘void LAMMPS_NS::PairTable::read_table(LAMMPS_NS::PairTable::Table*, char*, char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:378:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:380:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:381:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:415:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp: In member function ‘virtual void LAMMPS_NS::PairTable::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:977:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:978:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:979:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewaldflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:980:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&pppmflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:981:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&msmflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:982:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dispersionflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:983:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tip4pflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairSoft::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp:250:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp:254:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&prefactor[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp:255:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp:280:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp: In member function ‘virtual void LAMMPS_NS::PairUFM::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:290:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:294:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:295:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:296:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp: In member function ‘virtual void LAMMPS_NS::PairUFM::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:324:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:325:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zbl.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zbl.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/procmap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/procmap.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/procmap.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp: In member function ‘virtual void LAMMPS_NS::PairYukawa::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:256:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:260:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:261:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp: In member function ‘virtual void LAMMPS_NS::PairYukawa::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:288:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:289:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:290:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:291:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp: In member function ‘virtual void LAMMPS_NS::PairZero::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp:176:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp:180:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp: In member function ‘virtual void LAMMPS_NS::PairZero::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp:205:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp:206:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&coeffflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/python.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/python.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/python.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_mars.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_mars.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_mars.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_park.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_park.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_park.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/rcb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/rcb.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/rcb.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_data.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_data.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_data.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_dump.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_dump.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::command(int, char**)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:304:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:308:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&procsperfile,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:311:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:315:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:321:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:381:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:384:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&procsperfile,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:393:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:397:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:403:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::file_layout()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:1087:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(all_written_send_sizes,sizeof(int),nprocs_file,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp: In member function ‘char* LAMMPS_NS::ReadRestart::read_string()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:1269:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(value,sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::read_int_vec(int, int*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:1281:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(vec,sizeof(int),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::read_double_vec(int, double*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:1292:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(vec,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_native.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_native.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_native.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_xyz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_xyz.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_xyz.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_block.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_block.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_block.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cone.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cone.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cone.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cylinder.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cylinder.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cylinder.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_intersect.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_intersect.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_intersect.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_plane.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_plane.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_plane.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_prism.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_prism.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_prism.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_sphere.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_union.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_union.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_union.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/replicate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/replicate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/replicate.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/rerun.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/rerun.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/rerun.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reset_ids.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reset_ids.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/reset_ids.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/respa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/respa.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/respa.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/run.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/run.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/run.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/set.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/set.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/set.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/special.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/special.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/special.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/thermo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/thermo.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/thermo.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/timer.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/timer.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/timer.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/update.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/update.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/update.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/variable.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/variable.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/variable.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp: In constructor ‘LAMMPS_NS::Universe::Universe(LAMMPS_NS::LAMMPS*, MPI_Comm)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp:273:15: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(ver,"%04d%02d%02d", year % 10000, month, day % 100); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/stl_map.h:63, from /usr/include/c++/8/map:61, from /usr/lib/i386-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42, from /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:2684, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp:14: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 9 and 11 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/velocity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/velocity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/velocity.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/variable.cpp: In member function ‘int LAMMPS_NS::Variable::next(int, char**)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/variable.cpp:681:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&nextindex); ~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/verlet.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/verlet.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/verlet.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp: In member function ‘void LAMMPS_NS::WriteCoeff::command(int, char**)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp:97:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); // coeff ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp:101:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp:104:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ [ 43%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_data.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_data.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_data.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_dump.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_dump.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_restart.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_restart.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_restart.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_temp_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nh_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nh_asphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nh_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nph_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nph_asphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nph_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_npt_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_npt_asphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_npt_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere_noforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere_noforce.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere_noforce.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_line.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_tri.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_tri.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nvt_asphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nvt_asphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nvt_asphere.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_line_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_line_lj.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_line_lj.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp: In member function ‘virtual void LAMMPS_NS::PairGayBerne::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:467:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setwell[i],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:470:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&well[i][0],sizeof(double),3,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:474:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:478:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:479:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:480:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp: In member function ‘virtual void LAMMPS_NS::PairGayBerne::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:512:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:513:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&upsilon,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:514:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:515:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:516:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:517:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_tri_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_tri_lj.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_tri_lj.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_nparticle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_nparticle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_nparticle.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polygon.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polygon.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polygon.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp: In member function ‘virtual void LAMMPS_NS::PairRESquared::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:445:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setwell[i],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:448:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&well[i][0],sizeof(double),3,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:452:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:456:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:457:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:458:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp: In member function ‘virtual void LAMMPS_NS::PairRESquared::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:486:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:487:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polyhedron.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polyhedron.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polyhedron.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_body_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_body_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_body_local.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_temp_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_temp_body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_temp_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nh_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nh_body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nh_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nph_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nph_body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nph_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_npt_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_npt_body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_npt_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nve_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nve_body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nve_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nvt_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nvt_body.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nvt_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polygon.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polygon.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polygon.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_nparticle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_rounded_polyhedron.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_rounded_polyhedron.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp: In member function ‘virtual void LAMMPS_NS::AngleClass2::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:376:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:377:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:378:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:379:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:381:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:382:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:385:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:386:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:387:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:388:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp: In member function ‘virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp:187:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp:188:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp:189:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp:190:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp: In member function ‘virtual void LAMMPS_NS::DihedralClass2::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:840:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:841:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:842:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:843:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:844:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:845:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:847:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:848:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:849:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:850:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_r0[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:852:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f1_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:853:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f2_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:854:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f3_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:855:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_r0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:857:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f1_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:858:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f2_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:859:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f3_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:860:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_r0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:862:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f1_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:863:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f2_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:864:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f3_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:865:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:867:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f1_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:868:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f2_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:869:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f3_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:870:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:872:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:873:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:874:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:876:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:877:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_r10[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:878:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_r30[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:310:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:314:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:315:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:345:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:346:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:347:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp: In member function ‘virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:609:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:610:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:612:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:613:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:614:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k3[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:615:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:616:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:617:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/fix_wall_colloid.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:406:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:410:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:411:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:412:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:443:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:444:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:445:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:446:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:447:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:448:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:449:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:364:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:368:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:369:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:404:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:405:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp: In member function ‘virtual void LAMMPS_NS::PairBrownian::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:610:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:614:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:615:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp: In member function ‘virtual void LAMMPS_NS::PairBrownian::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:650:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:651:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:652:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagfld,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:653:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:654:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:655:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&t_target, sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:656:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed, sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:657:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:658:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:659:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:660:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian_poly.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp: In member function ‘virtual void LAMMPS_NS::PairColloid::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:401:31: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:405:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a12[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:406:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:407:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:408:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:409:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp: In member function ‘virtual void LAMMPS_NS::PairColloid::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:439:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:440:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:441:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricate::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:690:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:694:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:695:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricate::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:728:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:729:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:730:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagfld,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:731:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:732:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:733:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:734:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:735:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:736:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricateU::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1917:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1921:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1922:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricateU::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1954:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1955:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1956:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1957:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1958:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1959:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1960:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1961:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate_poly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate_poly.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate_poly.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_atom_gz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_atom_gz.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_atom_gz.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_cfg_gz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_cfg_gz.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_cfg_gz.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_custom_gz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_custom_gz.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_custom_gz.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_xyz_gz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_xyz_gz.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_xyz_gz.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/atom_vec_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:495:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:499:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:500:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:501:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:529:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:530:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:531:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:532:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:441:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:445:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:446:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:447:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:448:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:477:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:478:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:479:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:480:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:351:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:355:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:356:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:357:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:386:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:387:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:388:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:389:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:390:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_freeze.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_freeze.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_freeze.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_pour.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_pour.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_pour.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran_region.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran_region.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran_region.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp: In member function ‘virtual void LAMMPS_NS::PairGranHookeHistory::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:540:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp: In member function ‘virtual void LAMMPS_NS::PairGranHookeHistory::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:566:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kn,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:567:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kt,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:568:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamman,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:569:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gammat,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:570:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&xmu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:571:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dampflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald_disp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald_disp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald_disp.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d_wrap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d_wrap.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d_wrap.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/gridcomm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/gridcomm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/gridcomm.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm_cg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm_cg.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm_cg.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function ‘virtual void LAMMPS_NS::FixTuneKspace::init()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:95:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(old_acc_str,"%g",old_acc); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function ‘void LAMMPS_NS::FixTuneKspace::store_old_kspace_settings()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:206:23: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(old_acc_str,"%g",old_acc); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function ‘virtual void LAMMPS_NS::FixTuneKspace::pre_exchange()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:150:28: warning: ‘/long’ directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/long",base_pair_style); ^~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 6 and 25 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:155:30: warning: ‘/msm’ directive writing 4 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/msm",base_pair_style); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 24 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:140:28: warning: ‘/msm’ directive writing 4 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/msm",base_pair_style); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 24 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:133:28: warning: ‘/long’ directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/long",base_pair_style); ^~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 6 and 25 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:126:28: warning: ‘/long’ directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/long",base_pair_style); ^~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 6 and 25 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_msm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_msm.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:427:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:431:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:432:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:433:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:434:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:435:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:436:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:470:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:471:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:472:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:473:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:475:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:404:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:408:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:409:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:410:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:411:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:443:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:444:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:445:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:446:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:447:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:448:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:449:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:360:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:364:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck_a_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:365:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck_rho_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:366:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck_c_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:367:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_buck_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:399:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_buck_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:400:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:404:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:405:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_msm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_msm.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:297:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:300:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&scale[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:328:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:329:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:330:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:830:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:834:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:835:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:836:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:837:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:869:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:870:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:871:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:872:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:873:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:874:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:875:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:900:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:904:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:905:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:906:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:907:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:939:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:940:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:941:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:942:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:943:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:944:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:945:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:800:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:804:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:805:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:806:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:837:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:838:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:839:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:840:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:841:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:842:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:843:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:537:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:538:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:539:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:540:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:541:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:543:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:544:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:545:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:546:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:547:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:548:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:549:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1549:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1550:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1551:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1552:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1553:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1555:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1556:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1557:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1558:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1559:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1560:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:360:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:364:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:365:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:366:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:397:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:399:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:400:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp:477:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp:478:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp:479:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp:480:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_cg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_cg.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_cg.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_stagger.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_stagger.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_stagger.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_tip4p.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_tip4p.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_tip4p.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap_wrap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap_wrap.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap_wrap.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/fix_qeq_comb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/fix_qeq_comb.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/fix_qeq_comb.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp: In member function ‘void LAMMPS_NS::PairADP::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:564:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:565:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:566:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:567:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:592:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:616:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp: In member function ‘void LAMMPS_NS::PairADP::grab(FILE*, int, double*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:928:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp: In member function ‘void LAMMPS_NS::PairAIREBO::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3385:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3391:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3393:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3397:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3399:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3401:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3403:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3405:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3407:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3409:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3411:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3413:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3415:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3417:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3419:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3421:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3423:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3425:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3429:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3431:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3433:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3435:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3437:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3439:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3441:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3443:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3445:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3447:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3449:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3451:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3453:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3455:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3457:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3459:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3461:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3463:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3465:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3467:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3469:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3471:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3473:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3475:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3477:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3482:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3484:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3486:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3488:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3490:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3492:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3494:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3496:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3498:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3502:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3506:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3508:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3510:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3512:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3514:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3516:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3518:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3520:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3522:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3527:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3529:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3531:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3533:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3535:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3537:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3539:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3541:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3543:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3550:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3551:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3552:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3556:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3560:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3563:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3566:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3570:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3573:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3580:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3581:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3582:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3584:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3588:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3592:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3596:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3603:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3604:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3605:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3612:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3616:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3621:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3629:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3630:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3631:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3632:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3637:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3641:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3646:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3654:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3655:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3656:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3658:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3663:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3667:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3673:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3682:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3683:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3684:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3686:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3691:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3695:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3701:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3710:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3711:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3712:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3714:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3719:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3723:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3729:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3738:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3739:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3740:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3742:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3747:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3751:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3757:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo_morse.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp: In member function ‘void LAMMPS_NS::PairBOP::read_table(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:4982:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); // skip first comment line ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:4983:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:4988:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5017:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5085:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); // skip first comment line ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5087:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5089:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5093:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5098:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5102:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5104:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5106:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5115:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5122:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5126:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5130:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5132:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5136:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5138:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5142:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5144:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5148:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5150:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5154:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5156:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5160:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5162:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5164:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5173:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5180:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5188:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5196:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5204:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5211:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5215:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5232:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp: In member function ‘void LAMMPS_NS::PairComb3::read_lib()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:330:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:331:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:342:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:354:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:362:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:370:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:379:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:388:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:395:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:408:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:426:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:435:19: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:450:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:468:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:477:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:492:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:510:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:519:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp: In member function ‘virtual void LAMMPS_NS::PairEAM::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp:470:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp:471:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp:473:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp: In member function ‘void LAMMPS_NS::PairEAM::grab(FILE*, int, double*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp:788:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:143:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:168:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:192:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_cd.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMFS::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:143:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:168:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:194:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp: In member function ‘int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp:971:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp:975:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw_zbl.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp: In member function ‘void LAMMPS_NS::PairLCBOP::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:988:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:994:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:995:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:996:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&gamma_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:997:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&A); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:998:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&B_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:999:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&B_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1000:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&alpha); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1001:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&beta_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1002:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&beta_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1003:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&d); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1004:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1005:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_4); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1006:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_6); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1007:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&L); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1008:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&kappa); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1009:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&R_0); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1010:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&R_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1011:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_0); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1012:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_1_LR); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1013:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_2_LR); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1014:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&v_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1015:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&v_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1016:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1017:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1018:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&lambda_1); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1019:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&lambda_2); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1020:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1021:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&delta); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1024:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1033:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1040:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] while (1) { fgets(s,MAXLINE,fp); if (s[0] != '#') break; } ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1047:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1053:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_rebo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_rebo.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_rebo.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp: In member function ‘virtual void LAMMPS_NS::PairPolymorphic::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:580:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:581:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] while (line == strchr(line,'#')) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:597:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:615:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:651:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp: In member function ‘void LAMMPS_NS::PairPolymorphic::grab(FILE*, int, double*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:882:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_sw.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_sw.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_sw.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_mod.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_mod.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_mod.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_mod_c.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta_table.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta_table.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_atom_swap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_break.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_break.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_create.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_create.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_create.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_swap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_gcmc.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_gcmc.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_tfmc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_tfmc.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_tfmc.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM/pair_meam.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM/pair_meam.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM/pair_meam.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp: In member function ‘virtual void LAMMPS_NS::PairDSMC::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:350:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:354:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:355:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp: In member function ‘virtual void LAMMPS_NS::PairDSMC::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:384:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&max_cell_size,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:385:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:386:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:387:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/compute_msd_nongauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/compute_msd_nongauss.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/compute_msd_nongauss.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/compute_ti.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/dump_xtc.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/dump_xtc.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_deposit.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_deposit.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_deposit.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_efield.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_evaporate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_evaporate.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_gld.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_gld.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_gld.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_oneway.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_oneway.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_oneway.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_bcc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_bcc.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_bcc.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_fcc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_fcc.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_fcc.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_thermal_conductivity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_thermal_conductivity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_thermal_conductivity.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_ttm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_ttm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_ttm.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_viscosity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_viscosity.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_viscosity.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:382:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:389:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:390:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:391:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:423:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:424:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:425:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:426:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:427:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:331:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:335:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:336:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:337:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:338:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:339:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:369:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:370:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:371:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/xdr_compat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/xdr_compat.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/xdr_compat.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_delta.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:429:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:433:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:434:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:435:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:436:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:437:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:470:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:471:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:472:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:473:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:475:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp: In member function ‘virtual void LAMMPS_NS::AngleCharmm::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp:249:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp:250:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp:251:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_ub[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp:252:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r_ub[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosine::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine.cpp:197:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosinePeriodic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:250:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:251:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:252:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineSquared::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:219:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:220:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::AngleHarmonic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp:219:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp:220:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp: In member function ‘virtual void LAMMPS_NS::AngleTable::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:292:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:293:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp: In member function ‘void LAMMPS_NS::AngleTable::read_table(LAMMPS_NS::AngleTable::Table*, char*, char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:385:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:387:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:388:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:394:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:403:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:405:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_angle.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_bond.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_full.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_full.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_full.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_molecular.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_molecular.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_molecular.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_template.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_template.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_template.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp: In member function ‘virtual void LAMMPS_NS::BondFENE::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp:220:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp:221:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp:222:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp:223:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp: In member function ‘virtual void LAMMPS_NS::BondFENEExpand::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp:229:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp:230:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp:231:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp:232:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp:233:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp: In member function ‘virtual void LAMMPS_NS::BondGromos::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp:172:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp:173:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp:172:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp:173:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp: In member function ‘virtual void LAMMPS_NS::BondNonlinear::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp:171:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp:172:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp:173:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lamda[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp: In member function ‘virtual void LAMMPS_NS::BondMorse::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp:176:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp:177:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp:178:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp: In member function ‘virtual void LAMMPS_NS::BondQuartic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp:282:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp:283:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b2[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp:284:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rc[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp:285:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&u0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp: In member function ‘virtual void LAMMPS_NS::BondTable::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:236:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:237:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp: In member function ‘void LAMMPS_NS::BondTable::read_table(LAMMPS_NS::BondTable::Table*, char*, char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:314:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:316:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:317:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:323:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:335:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp: In member function ‘virtual void LAMMPS_NS::DihedralCharmm::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp:429:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp:430:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp:431:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp:432:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp:433:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp: In member function ‘virtual void LAMMPS_NS::DihedralCharmmfsw::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:472:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:473:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:475:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHarmonic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:334:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sign[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/fix_cmap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/fix_cmap.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/fix_cmap.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp:325:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralMultiHarmonic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:323:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a4[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:324:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a5[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp: In member function ‘virtual void LAMMPS_NS::DihedralOPLS::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp:338:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp: In member function ‘virtual void LAMMPS_NS::ImproperCvff::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp:339:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp:340:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sign[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp:341:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp: In member function ‘virtual void LAMMPS_NS::ImproperUmbrella::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp:323:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::ImproperHarmonic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp:280:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:379:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:383:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:384:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:385:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:440:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:441:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:442:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:443:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:444:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:445:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp" [ 56%] Building CXX object 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:437:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:444:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:478:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:621:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:625:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:626:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:627:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:663:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:664:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:665:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:666:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:667:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:669:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:670:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:671:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:672:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:673:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/atom_vec_peri.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/atom_vec_peri.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/atom_vec_peri.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:480:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:507:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:508:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:509:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:510:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:511:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:513:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_damage_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_damage_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_damage_atom.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_dilatation_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_dilatation_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_dilatation_atom.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_plasticity_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_plasticity_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_plasticity_atom.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/fix_peri_neigh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/fix_peri_neigh.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/fix_peri_neigh.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:495:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:499:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:500:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:501:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:502:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:503:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:570:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:574:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:575:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:576:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:577:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:578:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:579:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&m_yieldstress[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp:424:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp:428:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kspring[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp:429:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp:430:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp:431:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/compute_event_displace.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/compute_event_displace.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/compute_event_displace.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriVES::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:552:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:556:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:557:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:558:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:559:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:560:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:561:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&m_lambdai[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:562:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&m_taubi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_prd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_prd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_prd.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_tad.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_tad.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_tad.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_neb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/neb.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/neb.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/prd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/prd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/prd.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/tad.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/tad.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/tad.cpp" [ 57%] Building CXX object 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-I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/temper.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/temper.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/verlet_split.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/verlet_split.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/verlet_split.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_erotate_rigid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_erotate_rigid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_erotate_rigid.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_ke_rigid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_ke_rigid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_ke_rigid.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_rigid_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_rigid_local.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_rigid_local.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_ehex.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_ehex.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_ehex.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rattle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rattle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rattle.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid.cpp" [ 58%] Building CXX object 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-I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh_small.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh_small.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh_small.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph_small.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph_small.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph_small.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt_small.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt_small.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt_small.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve_small.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve_small.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve_small.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt_small.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt_small.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt_small.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_shake.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_shake.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_shake.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_append_atoms.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_append_atoms.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_append_atoms.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_msst.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_msst.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_msst.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp: In member function ‘virtual void LAMMPS_NS::FixRigidSmall::write_restart_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp:2604:19: warning: ‘%s’ directive writing up to 127 bytes into a region of size 93 [-Wformat-overflow=] sprintf(str,"Cannot open fix rigid restart file %s",outfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp:15: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 36 and 163 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_nphug.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_wall_piston.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_wall_piston.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_sna_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_sna_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_sna_atom.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snad_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snad_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snad_atom.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snav_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snav_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snav_atom.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/pair_snap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/pair_snap.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/pair_snap.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/sna.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/sna.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/sna.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD/fix_srd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD/fix_wall_srd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD/fix_wall_srd.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_invoke.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_invoke.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_invoke.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_move.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_move.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_move.cpp" [ 60%] Building CXX object 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/pair_python.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/pair_python.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/python_impl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/python_impl.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/python_impl.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_atom_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_atom_mpiio.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_atom_mpiio.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_cfg_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_cfg_mpiio.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_cfg_mpiio.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_custom_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_custom_mpiio.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_custom_mpiio.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_xyz_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_xyz_mpiio.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_xyz_mpiio.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/restart_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/restart_mpiio.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/restart_mpiio.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI/compute_voronoi_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI/compute_voronoi_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI/compute_voronoi_atom.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS/fix_poems.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS/fix_poems.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS/fix_poems.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC/fix_atc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC/fix_atc.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC/fix_atc.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/atom_vec_wavepacket.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/atom_vec_wavepacket.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/atom_vec_wavepacket.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/fix_bocs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/fix_bocs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/fix_bocs.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairAWPMDCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:604:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:607:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairAWPMDCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:631:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:632:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:633:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp: In member function ‘virtual void LAMMPS_NS::BondOxdnaFene::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:296:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:297:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&Delta[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:298:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:838:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:843:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_cxst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:844:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:845:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:846:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:847:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:848:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:849:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:850:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:851:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:853:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:854:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:855:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:856:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:857:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:859:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:860:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:861:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:862:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:863:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:865:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:866:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:867:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:868:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:869:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:871:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:872:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:873:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:874:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:875:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:877:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&AA_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:878:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&BB_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:942:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:943:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:944:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:458:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:463:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa_dh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:464:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qeff_dh_pf[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:465:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_dh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:466:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_dh_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:467:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_dh_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Dh::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:500:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:501:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:502:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:991:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:996:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_cxst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:997:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:998:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:999:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1000:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1001:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1002:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1003:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1004:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1006:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1007:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1008:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1009:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1010:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1012:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1013:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1014:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1015:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1016:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1018:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1019:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1020:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1021:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1022:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1024:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1025:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1026:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1027:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1028:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1030:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst3p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1031:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst3p_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1032:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst3p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1033:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst3p_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1034:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1035:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst4p_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1036:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1037:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst4p_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1107:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1108:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1109:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaExcv::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:718:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:723:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:724:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:725:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_ss_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:726:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:727:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_ss_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:728:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:729:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:730:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_sb_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:731:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:732:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_sb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:733:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:734:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:735:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_bb_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:736:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:737:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_bb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaExcv::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:780:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:781:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:782:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaHbond::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:978:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:983:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:984:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:985:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:986:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:987:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:988:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:989:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:990:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:991:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:992:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:993:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:995:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:996:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:997:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:998:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:999:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1001:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1002:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb2_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1003:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1004:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1005:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1007:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1008:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb3_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1009:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb3_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1010:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1011:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb3_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1013:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1014:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1015:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1016:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1017:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1019:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1020:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb7_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1021:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb7_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1022:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1023:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb7_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1025:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1026:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb8_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1027:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb8_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1028:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1029:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb8_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaHbond::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1104:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1105:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1106:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaStk::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:996:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1001:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1002:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1003:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1004:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1005:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1006:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1007:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1008:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1009:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1010:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1011:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1013:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1014:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1015:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1016:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1017:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1019:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1020:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1021:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1022:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1023:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1025:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1026:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1027:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1028:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1029:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1031:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1032:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1033:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1034:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1035:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1036:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1037:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1038:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaStk::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1104:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1105:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1106:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_edpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_edpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_edpd.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaXstk::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:950:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:955:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_xst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:956:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:957:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:958:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:959:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:960:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:961:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:962:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:963:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:965:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:966:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:967:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:968:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:969:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:971:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:972:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst2_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:973:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:974:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:975:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:977:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:978:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst3_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:979:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst3_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:980:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:981:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst3_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:983:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:984:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:985:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:986:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:987:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:989:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:990:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst7_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:991:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst7_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:992:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:993:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst7_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:995:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:996:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst8_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:997:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst8_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:998:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:999:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst8_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaXstk::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1072:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1073:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1074:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_edpd_temp_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_edpd_temp_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_edpd_temp_atom.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_edpd_source.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_edpd_source.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_edpd_source.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_edpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_edpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_edpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_tdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_tdpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_tdpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_tdpd_source.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_tdpd_source.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_tdpd_source.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:353:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:357:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&A_att[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:358:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&B_rep[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:359:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:360:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:361:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_r[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairMDPD::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:391:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:392:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:393:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp: In member function ‘virtual void LAMMPS_NS::PairEDPD::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:458:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:462:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:463:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:464:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&power[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:465:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:466:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:467:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&powerT[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:468:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cutT[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:471:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:475:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp: In member function ‘virtual void LAMMPS_NS::PairEDPD::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:513:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:514:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:515:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairTDPD::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:401:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:405:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:406:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:407:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&power[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:408:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:409:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cutcc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:411:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:412:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:413:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&powercc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairTDPD::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:449:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:450:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:451:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:452:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp: In member function ‘virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp:338:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&repscale[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:384:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lj_type[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:389:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:390:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:391:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDK::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:421:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:422:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:423:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:424:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:475:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:479:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lj_type[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:480:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:481:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:482:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:514:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:515:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:516:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:517:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:518:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:520:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/atom_vec_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/atom_vec_dpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/atom_vec_dpd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd_atom.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function ‘void LAMMPS_NS::FixSAEDVTK::invoke_vector(LAMMPS_NS::bigint)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:432:21: warning: ‘%s’ directive writing up to 127 bytes into a region of size 98 [-Wformat-overflow=] sprintf(str,"Cannot open fix saed/vtk file %s",nName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:22: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 31 and 158 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function ‘void LAMMPS_NS::FixSAEDVTK::options(int, char**)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:559:23: warning: ‘%s’ directive writing up to 127 bytes into a region of size 98 [-Wformat-overflow=] sprintf(str,"Cannot open fix saed/vtk file %s",nName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23, from /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:22: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 31 and 158 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_dpd_energy.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_cv.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_cv.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_cv.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp: In member function ‘void LAMMPS_NS::FixEOStable::read_table(LAMMPS_NS::FixEOStable::Table*, LAMMPS_NS::FixEOStable::Table*, char*, char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:216:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:218:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:219:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:225:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:237:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_rx.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_rx.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp: In member function ‘void LAMMPS_NS::FixEOStableRX::read_table(LAMMPS_NS::FixEOStableRX::Table*, LAMMPS_NS::FixEOStableRX::Table*, char*, char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:435:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:437:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:438:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:444:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:472:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:474:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_shardlow.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_shardlow.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_shardlow.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nbin_ssa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nbin_ssa.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nbin_ssa.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdt::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:382:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdt::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:419:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:420:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:483:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:487:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:488:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:489:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:490:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:520:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:521:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:522:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function ‘virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:974:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:978:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function ‘virtual void LAMMPS_NS::PairExp6rx::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1004:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1005:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1006:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1007:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function ‘void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:366:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:368:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:369:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:375:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:388:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:390:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function ‘virtual void LAMMPS_NS::PairMultiLucy::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:709:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:710:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function ‘void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:511:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:513:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:514:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:520:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:533:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:535:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function ‘virtual void LAMMPS_NS::PairMultiLucyRX::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:854:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:855:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_table_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_table_rx.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_table_rx.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:495:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:499:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:500:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:501:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&polar[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:502:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:504:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:540:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:541:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:542:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:543:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:544:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:545:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:546:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:547:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:548:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/atom_vec_electron.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/atom_vec_electron.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/atom_vec_electron.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function ‘virtual void LAMMPS_NS::PairThole::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:316:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&polar[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:322:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function ‘virtual void LAMMPS_NS::PairThole::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:352:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:353:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:354:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:355:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_region_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_region_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_region_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_langevin_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_langevin_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_langevin_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nh_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nh_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nh_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nph_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nph_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nph_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_npt_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_npt_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_npt_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nve_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nve_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nve_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nvt_eff.cpp.o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nvt_eff.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nvt_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nvt_sllod_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/compute_fep.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/compute_fep.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/compute_fep.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/fix_adapt_fep.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/fix_adapt_fep.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/fix_adapt_fep.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairEffCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp:970:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp:973:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairEffCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp:997:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp:998:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp:999:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCutSoft::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:277:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:281:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:282:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCutSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:311:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:312:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:314:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:315:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:316:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLongSoft::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:301:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:305:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLongSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:843:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:847:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:848:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:849:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:850:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:851:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:886:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:887:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:888:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:890:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:891:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:892:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:893:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:894:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:381:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:385:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:389:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:424:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:425:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:426:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:428:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:429:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:430:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:431:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:432:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:799:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:803:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:804:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:805:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:806:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:840:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:841:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:842:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:844:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:845:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:846:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:847:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:848:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:657:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:661:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:662:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:663:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:664:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:697:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:698:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:700:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:701:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:702:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:703:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:525:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:526:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:527:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:528:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:529:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:531:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:532:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:533:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:534:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:535:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairMorseSoft::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:317:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:322:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:323:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:324:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:325:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD/dump_h5md.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD/dump_h5md.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD/dump_h5md.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_fluid.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_momentum.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PLongSoft::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:462:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:463:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:464:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:465:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:466:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_pc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_pc.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_pc.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_viscous.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_viscous.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_viscous.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_manifoldforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder_dent.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_dumbbell.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_dumbbell.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_dumbbell.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_ellipsoid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_gaussian_bump.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_gaussian_bump.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane_wiggle.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_spine.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_spine.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_spine.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_torus.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_torus.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_torus.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_final.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp: In member function ‘virtual void LAMMPS_NS::user_manifold::manifold_thylakoid::checkup()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp:62:20: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] fprintf(screen,"I have %ld parts. They are:\n", parts.size()); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_init.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_force.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_force.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_force.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_funcs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_funcs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_funcs.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_impl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_impl.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_impl.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_done.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_done.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_done.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_global.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_global.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_global.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_param.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_param.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_param.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/pair_meamc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/pair_meamc.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/pair_meamc.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_linalg.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In member function ‘void potdata::readpot(const char*, const char*, double)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:187:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:246:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:306:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:329:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:331:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:343:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:345:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:358:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In function ‘void getparmindata(const char*, int*, double*, double*, double*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:109:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:123:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/pair_mgpt.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:228:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:229:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kcost[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:230:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ksint[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:231:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineShiftExp::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:260:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&umin[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:261:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:262:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cost[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:263:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sint[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:264:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp: In member function ‘virtual void LAMMPS_NS::AngleDipole::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp:209:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp:210:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp: In member function ‘virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp:235:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp:236:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp:237:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp:238:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp: In member function ‘virtual void LAMMPS_NS::AngleFourierSimple::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:241:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:242:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:243:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&N[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp: In member function ‘virtual void LAMMPS_NS::AngleQuartic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp:236:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp:237:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp:238:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp:239:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:181:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:182:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:183:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:183:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:184:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:185:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_ackland_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_ackland_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_ackland_atom.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_basal_atom.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_cnp_atom.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_entropy_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_entropy_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_entropy_atom.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_pressure_grem.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_temp_rotate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_temp_rotate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_temp_rotate.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp: In member function ‘virtual void LAMMPS_NS::DihedralCosineShiftExp::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:324:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&umin[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:325:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cost[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sint[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:328:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp: In member function ‘virtual void LAMMPS_NS::DihedralFourier::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp:371:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp:386:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(k[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp:387:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(multiplicity[i],sizeof(int),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp:388:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralNHarmonic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:332:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(a[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:328:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp: In member function ‘virtual void LAMMPS_NS::DihedralSpherical::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:759:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:779:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(Ccoeff[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:780:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(phi_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:781:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(phi_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:782:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(phi_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:783:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta1_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:784:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta1_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:785:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta1_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:786:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta2_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:787:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta2_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:788:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta2_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_addtorque.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_addtorque.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_addtorque.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp: In member function ‘virtual void LAMMPS_NS::DihedralTable::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1026:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1027:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp: In member function ‘void LAMMPS_NS::DihedralTable::read_table(LAMMPS_NS::DihedralTable::Table*, char*, char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1094:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1096:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1098:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1104:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp: In member function ‘virtual void LAMMPS_NS::DihedralTableCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1064:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1065:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1066:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1067:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1068:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1069:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1070:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1071:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1073:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1074:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1075:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp: In member function ‘void LAMMPS_NS::DihedralTableCut::read_table(LAMMPS_NS::DihedralTableCut::Table*, char*, char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1154:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1156:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1158:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1164:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp: In member function ‘virtual void LAMMPS_NS::FixAveCorrelateLong::end_of_step()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp:506:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_bond_react.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_bond_react.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_bond_react.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_filter_corotate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_filter_corotate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_filter_corotate.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_flow_gauss.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_flow_gauss.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_flow_gauss.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_gle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_gle.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_gle.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_grem.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_grem.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_grem.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_imd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_imd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_imd.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ipi.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ipi.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ipi.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_nvk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_nvk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_nvk.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_pimd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_pimd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_pimd.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_rhok.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_rhok.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_rhok.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_smd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_smd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_smd.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_srp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_srp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_srp.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ti_spring.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ti_spring.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ti_spring.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_ees.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_ees.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_ees.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp: In constructor ‘LAMMPS_NS::FixTTMMod::FixTTMMod(LAMMPS_NS::LAMMPS*, int, char**)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:123:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:124:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:128:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:129:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:133:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:134:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:138:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:139:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:143:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:144:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:148:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:149:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:153:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:154:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:158:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:159:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:163:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:164:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:168:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:169:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:173:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:174:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:178:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:179:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:183:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:184:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:188:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:189:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:193:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:194:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:198:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:199:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:203:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:204:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:208:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:209:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:213:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:214:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:218:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:219:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:224:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:228:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:229:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp: In member function ‘virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp:307:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp:308:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp: In member function ‘virtual void LAMMPS_NS::ImproperDistance::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp:253:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp:254:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp: In member function ‘virtual void LAMMPS_NS::ImproperFourier::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp:334:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&all[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_agni.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_agni.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_agni.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp: In member function ‘virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckMDF::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:345:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:349:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:350:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:351:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:352:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckMDF::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:381:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:382:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:384:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDiel::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:288:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rme[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigmae[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDiel::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:317:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:318:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:319:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulShield::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp:305:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigmae[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp:306:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulShield::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp:334:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip_multi.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_extep.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_extep.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_extep.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairGaussCut::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:309:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:313:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&hgauss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:314:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rmh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:315:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigmah[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairGaussCut::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:345:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:346:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:347:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:314:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aparm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bparm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_list.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_list.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_list.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:835:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:839:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:840:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:841:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:842:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:874:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:875:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:876:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:877:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:878:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:879:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:880:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:490:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:494:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:495:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:496:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:497:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:498:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&scale[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:527:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:528:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:529:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:314:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSpline::read_file(const char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:449:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:455:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:485:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*, bool)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:649:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:652:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:658:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:665:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:669:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:475:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSWSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:607:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:613:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:619:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:623:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:275:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:279:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:280:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:281:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:282:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:309:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:310:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp: In member function ‘virtual void LAMMPS_NS::PairMomb::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:312:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:317:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rr[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp: In member function ‘virtual void LAMMPS_NS::PairMomb::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:353:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:354:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sscale,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:355:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dscale,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:356:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:357:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_tersoff_table.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_grem.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_grem.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_grem.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_npt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_npt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_npt.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp: In member function ‘virtual void LAMMPS_NS::PairSRP::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:702:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:707:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:708:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp: In member function ‘virtual void LAMMPS_NS::PairSRP::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:736:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:737:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bptype,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:738:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&btype,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:739:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&min,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:740:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&midpoint,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:741:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&exclude,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp: In member function ‘virtual void LAMMPS_NS::AngleClass2P6::write_data(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:432:16: warning: too many arguments for format [-Wformat-extra-args] fprintf(fp,"%d %g %g %g %g\n", ^~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineBuck6d::write_data(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:356:16: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘double’ [-Wformat=] fprintf(fp,"%d %g %d %d\n",i,k[i],multiplicity[i],th0[i]); ^~~~~~~~~~~~~~~ ~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp: In member function ‘virtual void LAMMPS_NS::AngleClass2P6::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:389:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:390:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:391:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:392:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:393:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k5[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k6[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:396:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:397:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:400:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:338:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:339:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&th0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:420:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:424:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:425:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:426:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:427:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:428:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha_ij[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:429:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:462:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&vdwl_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:463:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:464:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:465:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:466:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:467:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/dump_molfile.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/molfile_interface.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/reader_molfile.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:453:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:457:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:458:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:459:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:460:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:461:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha_ij[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:462:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart_settings(FILE*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:496:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&vdwl_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:497:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&coul_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:498:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:499:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:500:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:501:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:502:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON/fix_phonon.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON/fix_phonon.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON/fix_phonon.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qbmsst.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qbmsst.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qbmsst.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qtb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qtb.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qtb.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/atom_vec_smd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/atom_vec_smd.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/atom_vec_smd.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_damage.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_damage.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_damage.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_hourglass_error.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_hourglass_error.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_hourglass_error.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_internal_energy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_internal_energy.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_internal_energy.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain_rate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain_rate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain_rate.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_rho.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_rho.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_rho.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_defgrad.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_defgrad.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_defgrad.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_dt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_dt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_dt.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_num_neighs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_num_neighs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_num_neighs.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_shape.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_shape.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_shape.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain_rate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain_rate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain_rate.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_stress.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_stress.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_stress.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_triangle_mesh_vertices.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_effm.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_effm.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_num_neighs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_num_neighs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_num_neighs.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_strain.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_strain_rate.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_strain_rate.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_stress.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_stress.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_stress.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_vol.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_vol.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_vol.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_adjust_dt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_adjust_dt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_adjust_dt.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_tlsph.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_tlsph.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_tlsph.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_ulsph.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_ulsph.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_ulsph.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_move_triangulated_surface.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_move_triangulated_surface.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_move_triangulated_surface.cpp" [ 76%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_setvel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_setvel.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_setvel.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_wall_surface.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_wall_surface.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_wall_surface.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_hertz.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_hertz.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_hertz.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp: In member function ‘virtual void LAMMPS_NS::FixSMD_TLSPH_ReferenceConfiguration::pre_exchange()’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp:152:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘LAMMPS_NS::bigint’ {aka ‘long long int’} [-Wformat=] printf("**** updating ref config at step: %ld\n", update->ntimestep); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_ulsph.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_ulsph.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_ulsph.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/smd_material_models.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/smd_material_models.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/smd_material_models.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp: In member function ‘virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:420:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:423:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:476:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr); ~~~~~^~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:480:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:488:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:497:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:515:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:529:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:552:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr); ~~~~~^~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:555:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:608:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:620:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:642:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:655:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:662:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:682:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:685:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:695:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:706:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:709:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:714:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:722:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:725:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:732:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:735:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:745:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:748:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:753:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:779:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:782:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:790:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:800:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/atom_vec_meso.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/atom_vec_meso.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/atom_vec_meso.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_e_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_e_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_e_atom.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_rho_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_rho_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_rho_atom.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_t_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_t_atom.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_t_atom.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso_stationary.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso_stationary.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso_stationary.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_idealgas.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_idealgas.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_idealgas.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_lj.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_lj.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_rhosum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_rhosum.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_rhosum.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater_morris.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater_morris.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater_morris.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_force_tally.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_force_tally.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_force_tally.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_heat_flux_tally.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_heat_flux_tally.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_heat_flux_tally.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_mol_tally.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_mol_tally.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_mol_tally.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_tally.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_tally.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_tally.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_stress_tally.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_stress_tally.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_stress_tally.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_pressure_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_pressure_uef.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_pressure_uef.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_temp_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_temp_uef.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_temp_uef.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/dump_cfg_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/dump_cfg_uef.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/dump_cfg_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nh_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nh_uef.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nh_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_npt_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_npt_uef.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_npt_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nvt_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nvt_uef.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nvt_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/uef_utils.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/uef_utils.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/uef_utils.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK/dump_vtk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK/dump_vtk.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK/dump_vtk.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/compute_temp_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_wolf_cs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_wolf_cs.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_coul_wolf_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_buck_coul_long_cs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_buck_coul_long_cs.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_coul_long_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_coul_long_cs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_coul_long_cs.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_dynamic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_dynamic.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_dynamic.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_fire.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_fire.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_fire.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_point.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_point.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_point.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_shielded.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_shielded.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_shielded.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_slater.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_slater.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_slater.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_data.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_data.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_data.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_sphere_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_sphere_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_sphere_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_class2_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_class2_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_class2_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_charmm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_charmm_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_charmm_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_delta_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_delta_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_delta_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_periodic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_periodic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_periodic_omp.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_squared_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_squared_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_squared_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_harmonic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_harmonic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_harmonic_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_table_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_table_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_table_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_sdk_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_sdk_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_sdk_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_exp_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_dipole_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_dipole_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_dipole_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_simple_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_simple_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_simple_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_quartic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_quartic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_quartic_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_class2_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_class2_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_class2_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_expand_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_expand_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_expand_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_gromos_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_gromos_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_gromos_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_morse_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_morse_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_morse_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_nonlinear_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_nonlinear_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_nonlinear_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_quartic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_quartic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_quartic_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_table_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_table_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_table_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_class2_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_class2_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_class2_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_charmm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_charmm_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_charmm_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_harmonic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_helix_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_helix_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_multi_harmonic_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_opls_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_fourier_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_fourier_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_fourier_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_nharmonic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_nharmonic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_nharmonic_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_quadratic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_quadratic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_quadratic_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_table_omp.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_table_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_table_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_gravity_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_gravity_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_gravity_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_neigh_history_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_neigh_history_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_neigh_history_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_omp.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_sphere_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_sphere_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_sphere_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_sphere_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_sphere_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_sphere_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_sphere_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_sllod_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_sllod_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_sllod_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_sphere_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" 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-DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_asphere_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_asphere_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_asphere_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_asphere_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_asphere_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_wall_gran_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_wall_gran_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_wall_gran_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_qeq_comb_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_qeq_comb_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_qeq_comb_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_peri_neigh_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_peri_neigh_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_peri_neigh_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nph_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nph_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nph_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_npt_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_npt_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_npt_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nve_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nve_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nve_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nvt_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_small_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_small_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nphug_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nphug_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nphug_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_class2_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_class2_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_class2_omp.cpp" [ 84%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cvff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cvff_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cvff_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_harmonic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_harmonic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_harmonic_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_umbrella_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_umbrella_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_umbrella_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cossq_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cossq_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cossq_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_fourier_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_fourier_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_fourier_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_ring_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_ring_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_ring_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/respa_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/respa_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/respa_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/ewald_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/ewald_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/ewald_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_cg_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_cg_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_cg_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_cg_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_cg_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_cg_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_atomonly_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_ghost_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_multi_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_multi_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_multi_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_ghost_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newtoff_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newton_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newtoff_omp.cpp" [ 87%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newton_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newton_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newton_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_beck_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_beck_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_beck_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_wolf_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_wolf_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_omp.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_cut_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_debye_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_debye_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_debye_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_dsf_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_wolf_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_wolf_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_dpd_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_dpd_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_dpd_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_dpd_tstat_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gauss_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gauss_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj96_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj96_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj96_cut_omp.cpp" [ 88%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cubic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cubic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cubic_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_expand_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_expand_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_expand_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_linear_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_morse_omp.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_morse_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_morse_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_soft_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_soft_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_soft_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_table_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_table_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_table_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_ufm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_ufm_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_ufm_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_zbl_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_zbl_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_zbl_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gayberne_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gayberne_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gayberne_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_resquared_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_resquared_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_resquared_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_poly_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_poly_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_poly_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_colloid_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_poly_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_poly_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_poly_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_colloid_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hertz_history_omp.cpp" [ 91%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_omp.cpp" [ 91%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_history_omp.cpp" [ 91%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_long_omp.cpp.o /usr/bin/c++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_long_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_long_omp.cpp" [ 91%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_msm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_msm_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_msm_omp.cpp" [ 91%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_long_coul_long_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_omp.cpp" [ 91%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_msm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_msm_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_msm_omp.cpp" [ 91%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp" [ 91%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp" [ 91%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp" [ 91%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_long_coul_long_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_long_coul_long_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_adp_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_adp_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_adp_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_morse_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_morse_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_morse_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_comb_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_comb_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_comb_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMAlloyOMP::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:139:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:167:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:187:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eim_omp.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMFSOMP::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:139:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:167:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:189:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nb3b_harmonic_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nb3b_harmonic_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nb3b_harmonic_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_rebo_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_sw_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_c_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_zbl_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_table_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_table_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_table_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_cut_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_cut_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_lps_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_lps_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_lps_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_pmb_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_pmb_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_pmb_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_soft_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_soft_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_soft_omp.cpp.o /usr/bin/c++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_soft_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_soft_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp" [ 94%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_soft_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_agni_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_agni_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_agni_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_diel_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_diel_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_diel_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_edip_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_edip_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_edip_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gauss_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_meam_spline_omp.cpp.o /usr/bin/c++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_meam_spline_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_meam_spline_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_table_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_table_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_asphere_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_asphere_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_asphere_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nh_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nh_omp.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nh_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_opt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" 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-I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_morse_opt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_morse_opt.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_ufm_opt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_tip4p_long_opt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_tip4p_long_opt.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_long_coul_long_opt.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_long_coul_long_opt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_long_coul_long_opt.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_opt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_alloy_opt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_alloy_opt.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_fs_opt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_fs_opt.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_fs_opt.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/fix_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/fix_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/fix_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pppm_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pppm_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pppm_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_beck_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_beck_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_beck_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_wolf_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_wolf_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_wolf_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_coul_cut_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_coul_cut_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_coul_cut_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_cut_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_debye_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_debye_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_dsf_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_dsf_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_dsf_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_dpd_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_dpd_tstat_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_dpd_tstat_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gauss_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gauss_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gauss_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj96_cut_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj96_cut_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj96_cut_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cubic_gpu.cpp.o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cubic_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cubic_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_expand_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_expand_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_gromacs_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_gromacs_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_gromacs_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_mie_cut_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_morse_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_morse_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_soft_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_soft_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_soft_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_table_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_table_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_table_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_ufm_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_ufm_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_ufm_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_yukawa_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_yukawa_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_yukawa_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_zbl_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_zbl_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_zbl_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gayberne_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gayberne_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gayberne_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_resquared_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_resquared_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_resquared_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_class2_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_class2_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_class2_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_colloid_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_colloid_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_yukawa_colloid_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_yukawa_colloid_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_yukawa_colloid_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_dipole_long_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_dipole_long_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_long_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_long_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_coul_long_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_coul_long_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_charmm_coul_long_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_gpu.cpp" /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_msm_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_msm_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_fs_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_fs_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_fs_gpu.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMAlloyGPU::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:377:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:378:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:379:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:380:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:405:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:425:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_sw_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_sw_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_sw_gpu.cpp" /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_fs_gpu.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMFSGPU::read_file(char*)’: /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:377:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:378:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:379:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:380:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:405:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:427:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_tersoff_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_tersoff_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_tersoff_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_tersoff_zbl_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_vashishta_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_vashishta_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_vashishta_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_sdk_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_sdk_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_sdk_gpu.cpp" [100%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_sdk_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_sdk_coul_long_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_sdk_coul_long_gpu.cpp" [100%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_expand_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp" [100%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_wolf_cs_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_wolf_cs_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_wolf_cs_gpu.cpp" [100%] Building CXX object CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_long_cs_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_long_cs_gpu.cpp.o" -c "/<>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_long_cs_gpu.cpp" [100%] Linking CXX executable lmp /usr/bin/cmake -E cmake_link_script CMakeFiles/lmp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 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/usr/lib/i386-linux-gnu/libvtkFiltersParallelStatistics-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersProgrammable-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersPython-6.3.so.6.3.0 /usr/lib/libvtkWrappingTools-6.3.a /usr/lib/i386-linux-gnu/libvtkFiltersReebGraph-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersSMP-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersSelection-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersTexture-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersVerdict-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkverdict-6.3.so.6.3.0 -ltiff -lproj /usr/lib/i386-linux-gnu/libvtkIOAMR-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so -lsz -ldl -lm /usr/lib/i386-linux-gnu/libvtkIOEnSight-6.3.so.6.3.0 -lnetcdf_c++ /usr/lib/i386-linux-gnu/libvtkIOExport-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingGL2PS-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingContextOpenGL-6.3.so.6.3.0 -lgl2ps /usr/lib/i386-linux-gnu/libvtkIOFFMPEG-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOMovie-6.3.so.6.3.0 -ltheoraenc -ltheoradec -logg /usr/lib/i386-linux-gnu/libvtkIOGDAL-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOGeoJSON-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOImport-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOInfovis-6.3.so.6.3.0 -lxml2 /usr/lib/i386-linux-gnu/libvtkIOMINC-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOMPIImage-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOMPIParallel-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOParallel-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIONetCDF-6.3.so.6.3.0 -ljsoncpp /usr/lib/i386-linux-gnu/libvtkIOMySQL-6.3.so.6.3.0 -lsqlite3 /usr/lib/i386-linux-gnu/libvtkIOODBC-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOPLY-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOParallelExodus-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOParallelLSDyna-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOParallelNetCDF-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOParallelXML-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOPostgreSQL-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOVPIC-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkVPIC-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOVideo-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOXdmf2-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkxdmf2-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingMath-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingMorphological-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingStatistics-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingStencil-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkInteractionImage-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkLocalExample-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkParallelMPI4Py-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingExternal-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingFreeTypeFontConfig-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingImage-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingLOD-6.3.so.6.3.0 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/usr/lib/i386-linux-gnu/libvtkChartsCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingContext2D-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersImaging-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkInfovisLayout-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkInfovisBoostGraphAlgorithms-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkInfovisCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkViewsCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkInteractionWidgets-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersHybrid-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingGeneral-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingSources-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersModeling-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingHybrid-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOImage-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkDICOMParser-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkmetaio-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkInteractionStyle-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingAnnotation-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingColor-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingVolume-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingLabel-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingFreeType-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkRenderingCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkCommonColor-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersExtraction-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersStatistics-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingFourier-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkalglib-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersGeometry-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersSources-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersGeneral-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersCore-6.3.so.6.3.0 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"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles" 0 make[1]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1' mkdir test; cp examples/crack/* test/ cd test; /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/lmp < in.crack -------------------------------------------------------------------------- [[49292,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces: Module: OpenFabrics (openib) Host: lgw01-amd64-023 Another transport will be used instead, although this may result in lower performance. NOTE: You can disable this warning by setting the MCA parameter btl_base_warn_component_unused to 0. -------------------------------------------------------------------------- LAMMPS (22 Aug 2018) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:87) using 1 OpenMP thread(s) per MPI task Lattice spacing in x,y,z = 1.11428 1.92998 1.11428 Created orthogonal box = (0 0 -0.278569) to (111.428 77.1994 0.278569) 1 by 1 by 1 MPI processor grid Created 8141 atoms Time spent = 0.00192037 secs 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary 7537 atoms in group mobile 820 atoms in group leftupper 841 atoms in group leftlower Setting atom values ... 820 settings made for type Setting atom values ... 841 settings made for type Setting atom values ... 302 settings made for type Setting atom values ... 302 settings made for type WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:488) Neighbor list info ... update every 1 steps, delay 5 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 2.8 ghost atom cutoff = 2.8 binsize = 1.4, bins = 80 56 1 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair lj/cut, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/2d/newton bin: standard Setting up Verlet run ... Unit style : lj Current step : 0 Time step : 0.003 Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 Loop time of 13.1979 on 1 procs for 5000 steps with 8141 atoms Performance: 98197.267 tau/day, 378.847 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 10.658 | 10.658 | 10.658 | 0.0 | 80.76 Neigh | 0.6604 | 0.6604 | 0.6604 | 0.0 | 5.00 Comm | 0.033204 | 0.033204 | 0.033204 | 0.0 | 0.25 Output | 0.002074 | 0.002074 | 0.002074 | 0.0 | 0.02 Modify | 1.428 | 1.428 | 1.428 | 0.0 | 10.82 Other | | 0.4158 | | | 3.15 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 71389 ave 71389 max 71389 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 71389 Ave neighs/atom = 8.76907 Neighbor list builds = 100 Dangerous builds = 0 Total wall time: 0:00:13 rm -rf test make[1]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=cmake --builddirectory=/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build dh_testroot -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_prep -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_auto_install -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build cd debian/build && make -j4 install DESTDIR=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' /usr/bin/cmake -H"/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" -B"/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/depend make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/meam.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/meam.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/awpmd.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 1%] Built target meam make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend [ 2%] Built target awpmd make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/h5md.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 2%] Built target h5md make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/ocl_get_devices.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/poems.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 2%] Built target ocl_get_devices [ 5%] Built target poems make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/gpu.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 13%] Built target gpu make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/atc.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [ 18%] Built target atc make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' cd "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/lmp.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build make[3]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/lmp.dir/build'. make[3]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' [100%] Built target lmp make[2]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' /usr/bin/cmake -E cmake_progress_start "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/bin/lmp -- Set runtime path of "/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/bin/lmp" to "" -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ffield.smtbq.TiO2 -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiC_Erhart-Albe.tersoff -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Ta4.mgpt.README -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/FeCr.cdeam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/NiAlH_jea.eam.fs -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/WL.meam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/AlCu.adp -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiC.tersoff.zbl -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Ta06A.snap -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ffield.comb -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CCu_v2.bop.table -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ffield.reax.FC -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Si_2.meam.spline -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Ag_u3.eam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Au_u3.eam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ffield.reax.AuO -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/AlCu.bop.table -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CuNi.eam.alloy -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiC_1989.tersoff -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Cu_u3.eam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CuTa.eam.alloy -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Pt_u3.eam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CoAl.eam.alloy -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CdZnTe_v1.bop.table -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Ni.meam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiC.edip -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/library.meam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Si.b.meam.sw.spline -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Al_zhou.eam.alloy -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/W_2940_2017_2.snapparam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ffield.ci-reax.CH -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/BNCH.ILP -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiCGe.tersoff -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CdTeSe.bop.table -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/W_2940_2017_2.snap -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/NiAlH_jea.eam.alloy -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Pd_u3.eam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Al_jpc.agni -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CdTe.sw -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Ta4.mgpt.potin -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiC.vashishta -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Mg_mm.eam.fs -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/W_zhou.eam.alloy -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ffield.eim -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/C.lcbop -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CdTe.bop.table -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Cu.meam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Zr_mm.eam.fs -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/README.reax -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Mo_Chen_PRM2017.snap -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/MOH.nb3b.harmonic -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/V6.1.mgpt.README -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Ti.meam.sw.spline -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiC.tersoff -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Al_mm.eam.fs -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ci-reaxFF_ZBL.dat -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/InP.vashishta -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/AlO.streitz -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ffield.reax.cho -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Cu_mishin1.eam.alloy -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/GaN.sw -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiC_1994.tersoff -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ffield.reax.Fe_O_C_H -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Ta4.mgpt.parmin -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Ta6.8x.mgpt.README -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/charmm22.cmap -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Si.tersoff.mod -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CuH.bop.table -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Ge.tersoff -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiO.1990.vashishta -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/AlFe_mm.eam.fs -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CC.KC-full -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Fe_mm.eam.fs -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/GaN.tersoff -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Si.sw -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Mo5.2.mgpt.README -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/TiO.meam.spline -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CH.airebo -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiC.gw.zbl -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/AlSiMgCuFe.meam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CdZnTe_v2.bop.table -- Installing: 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/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Si.edip -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiC_1990.tersoff -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Mo_Chen_PRM2017.snapcoeff -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ffield.reax.AB -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/GaAs.bop.table -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/FeP_mm.eam.fs -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiC.meam -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/ffield.comb3 -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/W_2940_2017_2_He_JW2013.snap -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiO.1997.vashishta -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/SiO.1994.vashishta -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/CuZr_mm.eam.fs -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Cu_zhou.eam.alloy -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/usr/share/lammps/potentials/potentials/Ta6.8x.mgpt.potin -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/etc/profile.d/lammps.sh -- Installing: /<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/tmp/etc/profile.d/lammps.csh make[1]: Leaving directory '/<>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build' dh_install -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_installdocs -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_installchangelogs -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_installexamples -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_installman -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_perl -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_link -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_strip_nondeterminism -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_compress -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_fixperms -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_missing -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_strip -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_makeshlibs -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_shlibdeps -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_installdeb -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_gencontrol -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_md5sums -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build dh_builddeb -a -O--sourcedirectory=cmake -O--builddirectory=/<>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing lammps (in debian/lammps); do_strip: , oemstrip: pkgstriptranslations: processing lammps-dbgsym (in debian/.debhelper/lammps/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/lammps/DEBIAN/control, package lammps, directory debian/lammps pkgstripfiles: Truncating usr/share/doc/lammps/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package lammps ... pkgstripfiles: No PNG files. dpkg-deb: building package 'lammps' in '../lammps_0~20180822.gitb47e49223+dfsg1-2_i386.deb'. pkgstripfiles: processing control file: debian/.debhelper/lammps/dbgsym-root/DEBIAN/control, package lammps-dbgsym, directory debian/.debhelper/lammps/dbgsym-root dpkg-deb: building package 'lammps-dbgsym' in 'debian/.debhelper/scratch-space/build-lammps/lammps-dbgsym_0~20180822.gitb47e49223+dfsg1-2_i386.deb'. Renaming lammps-dbgsym_0~20180822.gitb47e49223+dfsg1-2_i386.deb to lammps-dbgsym_0~20180822.gitb47e49223+dfsg1-2_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../lammps_0~20180822.gitb47e49223+dfsg1-2_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build lammps-0~20180822.gitb47e49223+dfsg1 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181009-2151 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ lammps_0~20180822.gitb47e49223+dfsg1-2_i386.changes: ---------------------------------------------------- Format: 1.8 Date: Thu, 13 Sep 2018 20:52:16 +0200 Source: lammps Binary: lammps lammps-doc lammps-data Architecture: i386 Version: 0~20180822.gitb47e49223+dfsg1-2 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Anton Gladky Description: lammps - Molecular Dynamics Simulator lammps-data - Molecular Dynamics Simulator. Data (potentials) lammps-doc - Molecular Dynamics Simulator. Documentation and examples Changes: lammps (0~20180822.gitb47e49223+dfsg1-2) unstable; urgency=medium . * [803c676] Disable REAX because it causes segfault on mips* * [88f9fca] Update Standards-Version to 4.2.1 Checksums-Sha1: 7ef09854f59f54be8ab2645c0b887e71ea021737 99651224 lammps-dbgsym_0~20180822.gitb47e49223+dfsg1-2_i386.ddeb 63eef10847792d744752e1d8ca959037ef77b036 21907 lammps_0~20180822.gitb47e49223+dfsg1-2_i386.buildinfo c576ae2aacdeb2333e36c181c22b4519c71fde3e 5779360 lammps_0~20180822.gitb47e49223+dfsg1-2_i386.deb Checksums-Sha256: 624c8a11742c599a938d9a92089fee0d7d470c402f728ac2fa6b1e1224c1c0ed 99651224 lammps-dbgsym_0~20180822.gitb47e49223+dfsg1-2_i386.ddeb 5c64e2f9ea57baa2c5f444a36ca72bda7af75f6cfcbe2483b6c736e0b281cf83 21907 lammps_0~20180822.gitb47e49223+dfsg1-2_i386.buildinfo 0dba5dad5ae2b0032706f54ae532b29a537263ade9d179fa8d17179c3a3e9e2b 5779360 lammps_0~20180822.gitb47e49223+dfsg1-2_i386.deb Files: 21619edefb7135b38a997dd6a929d1ac 99651224 debug optional lammps-dbgsym_0~20180822.gitb47e49223+dfsg1-2_i386.ddeb 47994698f1b5714f80496e84a8700836 21907 science optional lammps_0~20180822.gitb47e49223+dfsg1-2_i386.buildinfo ce2f537131fe93f8bbfbbf5660c9ca6e 5779360 science optional lammps_0~20180822.gitb47e49223+dfsg1-2_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ lammps_0~20180822.gitb47e49223+dfsg1-2_i386.deb ----------------------------------------------- new debian package, version 2.0. size 5779360 bytes: control archive=1300 bytes. 1614 bytes, 23 lines control 327 bytes, 5 lines md5sums Package: lammps Version: 0~20180822.gitb47e49223+dfsg1-2 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 25785 Depends: libblas3 | libblas.so.3, libc6 (>= 2.27), libfftw3-double3 (>= 3.3.5), libgcc1 (>= 1:7), libgfortran5 (>= 8), libgomp1 (>= 4.9), libhdf5-openmpi-100 (>= 1.8.14), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, libnetcdf13 (>= 4.0.1), libopenmpi3, libpng16-16 (>= 1.6.2-1), libpython2.7 (>= 2.7), libstdc++6 (>= 5.2), libvoro++1 (>= 0.4.6), libvtk6.3, ocl-icd-libopencl1 | libopencl1, ocl-icd-libopencl1 (>= 1.0) | libopencl-1.1-1, ocl-icd-libopencl1 (>= 1.0) | libopencl-1.2-1, ocl-icd-libopencl1 (>= 2.2.0) | libopencl-2.0-1, zlib1g (>= 1:1.1.4), mpi-default-bin Recommends: lammps-doc Section: science Priority: optional Homepage: http://lammps.sandia.gov/ Description: Molecular Dynamics Simulator LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. . LAMMPS has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. . LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality. drwxr-xr-x root/root 0 2018-09-13 18:52 ./ drwxr-xr-x root/root 0 2018-09-13 18:52 ./usr/ drwxr-xr-x root/root 0 2018-09-13 18:52 ./usr/bin/ -rwxr-xr-x root/root 26371168 2018-09-13 18:52 ./usr/bin/lmp drwxr-xr-x root/root 0 2018-09-13 18:52 ./usr/share/ drwxr-xr-x root/root 0 2018-09-13 18:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-09-13 18:52 ./usr/share/doc/lammps/ -rw-r--r-- root/root 214 2018-09-05 21:13 ./usr/share/doc/lammps/NEWS.Debian.gz -rw-r--r-- root/root 1067 2018-09-13 18:52 ./usr/share/doc/lammps/changelog.Debian.gz -rw-r--r-- root/root 16833 2018-09-04 21:19 ./usr/share/doc/lammps/copyright drwxr-xr-x root/root 0 2018-09-13 18:52 ./usr/share/man/ drwxr-xr-x root/root 0 2018-09-13 18:52 ./usr/share/man/man2/ -rw-r--r-- root/root 767 2018-09-13 18:52 ./usr/share/man/man2/lmp.2012-02-23.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 2291728 Build-Time: 4211 Distribution: cosmic-proposed Host Architecture: i386 Install-Time: 218 Job: lammps_0~20180822.gitb47e49223+dfsg1-2.dsc Machine Architecture: amd64 Package: lammps Package-Time: 4453 Source-Version: 0~20180822.gitb47e49223+dfsg1-2 Space: 2291728 Status: successful Version: 0~20180822.gitb47e49223+dfsg1-2 -------------------------------------------------------------------------------- Finished at 20181009-2151 Build needed 01:14:13, 2291728k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15524756 Scanning for processes to kill in build PACKAGEBUILD-15524756